G139639


Basic Information

Item Value
gene id G139639
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 7001665 ~ 7073536 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU175618
TACATGGTaaaaattatactttattttactacataagaaaaaaaaaaaaagcatcccaGCACAAGCAATGACCTTTCAAAGTAAGCTTCTGGTAAAGCAAAGAATATATGAAAAAGGCTAAACAccacattttagttatttaaacaaaGGGAGTCAAATCATTCATTCAAAATGCCAGTTTTTGTCCTGCAAATGAGAAGACCTCCATTCAAAACATTTGAGGCCACATGTCTTAAAGTTGCAGCTGAGCCACAACTGAACTAATAAATGTGCCcagagcattttaaatatttattgggaGTCTTTGAAGCCCACATTTAGTTCTTCTCCCACAGAAGGGAACACAGAAACCCAGTGAAGGCAAAGTCAGATTTAAACTATTGTATTCCTTTCATGTTTAGACATTTGTACCAACACCCACAACTTCAAGGGGACAAGCTGATTTTATTCCTCatctatgcattttaaaaccatctccacaattttgatttaaaagaaatgccTGAGTGTATCAAGGTAAACACAGGTAATTAAACTTTATTTCCCCATAGTATCACATTTAATAGGACTTTTTCAGTTGGCTTTCTGCACACAAGTAAAAAGTAAACCtcaaaaaacaggaaaatagtAAAATGACCCAAGTGATCAACCTTTTAACTCATTTCCTTTTAATCTAGATGTTACATGTACATTGtgtaaaatatactttaagATTAGAATGGTCCGATGAGGTTTCTAACAATGCATAAGCTGAACACTGTCACACAAGGAAATCTTCCAGTCTATTccagtatattttatatttttatatatatatacacacacgcgctgcgAAGTGTGGAAAACAAAAGGTAATGCATGGCAGAAGTGTGGACAAAAGTAGCAAATTCACAACATTGcaggtttattttttttttttttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU175618 True 926 lncRNA 0.33 3 7001665 7073536

Neighbor

gene id symbol gene type direction distance location
AMCG00002933 pcdh15b,LOC108273410,LOC106578947 coding downstream 244874 6743734 ~ 6756791 (-)
AMCG00002932 LOC106589399,LOC101467287,LOC102215614 coding downstream 264391 6645632 ~ 6737274 (-)
AMCG00002927 a1cf coding downstream 572225 6422004 ~ 6429440 (-)
AMCG00002923 NA coding downstream 646799 6345840 ~ 6354866 (-)
AMCG00002924 papss2,papss2b,paps2,LOC107753426,LOC107584134,LOC107680272,LOC107724695 coding downstream 656842 6331650 ~ 6344823 (-)
AMCG00002936 NA coding upstream 4398 7077934 ~ 7081623 (-)
AMCG00002941 NA coding upstream 115801 7189337 ~ 7197989 (-)
AMCG00002948 chat,LOC107588646,LOC107683741,LOC107707518,LOC108245700 coding upstream 289516 7363052 ~ 7371613 (-)
AMCG00002947 NA coding upstream 329045 7402581 ~ 7407518 (-)
AMCG00002951 NA coding upstream 360715 7434251 ~ 7446572 (-)
G139593 LOC100846954,LOC107575789 non-coding downstream 491540 6482267 ~ 6510125 (-)
G139496 NA non-coding downstream 842902 6157743 ~ 6158763 (-)
G139249 NA non-coding downstream 1605106 5396339 ~ 5396559 (-)
G139039 NA non-coding downstream 2417493 4583865 ~ 4584172 (-)
G139029 NA non-coding downstream 2490358 4507504 ~ 4511307 (-)
G139668 NA non-coding upstream 145333 7218869 ~ 7219192 (-)
G139752 NA non-coding upstream 382008 7455544 ~ 7458491 (-)
G139825 NA non-coding upstream 872516 7946052 ~ 7946521 (-)
G139867 NA non-coding upstream 1037489 8111025 ~ 8115245 (-)
G139881 NA non-coding upstream 1107754 8181290 ~ 8181576 (-)
G138932 NA other downstream 2998861 4001650 ~ 4002804 (-)
AMCG00002828 NA other downstream 3048341 3928761 ~ 3953324 (-)
G138741 NA other downstream 4282246 2718208 ~ 2719419 (-)
AMCG00002752 p4ha1,LOC107753313,LOC106578992 other downstream 6076267 920788 ~ 925398 (-)
AMCG00002743 psap other downstream 6180074 805760 ~ 821591 (-)
AMCG00002945 NA other upstream 275275 7348811 ~ 7352821 (-)
AMCG00002970 cj104,anapc16 other upstream 857630 7931166 ~ 7938241 (-)
G139933 LOC108443181 other upstream 1411825 8485361 ~ 8494596 (-)
G140006 NA other upstream 1773496 8847032 ~ 8847840 (-)
G140015 NA other upstream 2163122 9236658 ~ 9237730 (-)

Expression


Co-expression Network