G139832


Basic Information

Item Value
gene id G139832
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 7998213 ~ 7999259 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU175863
ccTTCCCTAGGACAGATCATCCAGAATTTAAATGGTGTCTCCCTGATTCATCAGTTACTCTCAATACAGCCATTTCACAGTAGAAGAGCCATgggttatcttttttttatgtttattcatAAAGCTAACAGACTTGTAACAGTACACATCACAACCTGCCTGATTAATTTACTCACACAAACTCCATGAACACACAGCTATGTCTGGAAATTGGGCATAAATCACTGCATACCTGTAAAGCCCGATACGATCTGACTAATGGGAAGCTTTGTGCACGTATTGAATCCATTACTTTTCCAACCTTTTTTCCTCCCCTGAATTTTCAATCTCCTCTGCGACTTTTTTTTCATGCCAgtaaattgaaaagaaaagaaagaaaaccccATGGTAACACATGGATCAGCCACCAGATTTCATTACTACACCAgtgacaaataaaatcaattatctTGCAGGATATACTCCCAGAAATAATCAGGATTATGGAagtcaaaaaatgtattggatCGAGTCTAGCCTCAAATTTCCTCTGAGGTCAAAGTGAGCAGCAGTTTCATTAAGTCAATATAAACGTTCTGATTCTTTTCCGCACTATAATTCaatatcatgtatttatttaacactggGTTATAGATTCAATGTTTTAGTCAGCCTTTTACATATCTTTTCACATTCTTGAGAAATGGCAGTTTTTAAGAGATAGCTTTGAATCAAGACCTTCCGTAGATCGTGTATTCTTCACGCATCTGTGGCCCTCTAAGGCGTGGTTACCTCACTGGGGGGAGCCGGTGTGCGGTGACAGTCTGAGCCGGGCCGGGTGAGGTCAGAGTTTGCTGCGTCTGTCCTGCAGCCTCCACACCCCTCGGACATCACCGCCCGCTCTGTCCAGCTGCTCGAATACTTTGGCATCTTCAGTCAGGTCGAAGTGCTGCAGCAAGGGCCCCAGCACGGTGACTGGGACGCTGAAGTTCAGGTGTGGATAGGTCACTCTGGCCGCAGAATCGCGTGTGTTGCTGGACACAAGACCTAAGTGATGGAAGGACACAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU175863 True 1047 lncRNA 0.44 1 7998213 7999259

Neighbor

gene id symbol gene type direction distance location
AMCG00002966 spock2,LOC108443083 coding upstream 188 7955216 ~ 7998025 (+)
AMCG00002961 NA coding upstream 51689 7938432 ~ 7946524 (+)
AMCG00002954 NA coding upstream 134792 7847978 ~ 7863421 (+)
AMCG00002953 ndufb8,LOC102781364,LOC106577308 coding upstream 152343 7843544 ~ 7845870 (+)
AMCG00002959 NA coding upstream 168495 7828091 ~ 7829718 (+)
AMCG00002974 NA coding downstream 71725 8070984 ~ 8081794 (+)
AMCG00002973 LOC107595167 coding downstream 137481 8136740 ~ 8172504 (+)
AMCG00002976 NA coding downstream 207132 8206391 ~ 8213095 (+)
AMCG00002977 rps24,LOC102780737 coding downstream 230388 8229647 ~ 8234400 (+)
AMCG00002983 zmiz1,LOC103381918 coding downstream 477433 8476692 ~ 8487793 (+)
G139827 NA non-coding upstream 44873 7953126 ~ 7953340 (+)
G139667 NA non-coding upstream 801116 7196878 ~ 7197097 (+)
G139656 NA non-coding upstream 845474 7152537 ~ 7152739 (+)
G139633 NA non-coding upstream 931839 7062523 ~ 7066374 (+)
G139572 a1cf,LOC107708930,LOC107695528,LOC107654048,LOC107739758 non-coding upstream 1575045 6420166 ~ 6423168 (+)
G139836 NA non-coding downstream 3543 8002802 ~ 8003057 (+)
G139837 NA non-coding downstream 4056 8003315 ~ 8003645 (+)
G139838 NA non-coding downstream 4645 8003904 ~ 8005450 (+)
G139850 NA non-coding downstream 20761 8020020 ~ 8021401 (+)
G139880 NA non-coding downstream 182046 8181305 ~ 8181534 (+)
G139784 NA other upstream 71381 7923182 ~ 7926832 (+)
AMCG00002960 NA other upstream 77305 7909252 ~ 7920908 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other upstream 618726 7376687 ~ 7379487 (+)
AMCG00002939 ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527 other upstream 924675 7066855 ~ 7073538 (+)
G139492 NA other upstream 1845093 6147748 ~ 6153120 (+)
AMCG00002965 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 38318 8037577 ~ 8044413 (+)
AMCG00002982 NA other downstream 493746 8493005 ~ 8496965 (+)
AMCG00002996 NA other downstream 1237481 9236740 ~ 9244099 (+)
AMCG00002998 NA other downstream 1301052 9300311 ~ 9316633 (+)
G140030 NA other downstream 1326229 9325488 ~ 9330464 (+)

Expression


Co-expression Network