G139838


Basic Information

Item Value
gene id G139838
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 8003904 ~ 8005450 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU175869
CTTTCTTCAGTCCTGACCTTCACGATCACTTTTGATGATCTTTCCACTACATGTCTGCAAGTCAGCATTATCCTCGAATTCATAAGCACCCCAGAGCCCCAGAGCTGGCCACACTCAACAAGGACCACCACAGGATGATTTTGAAGAGCTCTGGCTTCGGGGCCACTTGACAAGACCTGTGTGAAAGTCACTGGTCTCTGACGAGACTTTTCTTTCAGCCATGGGGCACTTTTAGAGCCCAACATCCTAATATTCCTGAGAATATACTCTACAGAACACACCAAAGTCAGACCAATCCATTCGTTTGCCTTCCTGCATAATGAAGACACTATTAATCCCACGAGGTAGAAGTGGTCTCCTTTCTTTATGAAAAGCCCTCCTCCTTCAGTGCCAGGTAAGCAGCGAGCATCTGTCAGGATCACCGCATTTCCCTCCCCAGCCAGATTGCTCACGATGCCTTTGCTGAGGGTGTTCATGAATATATCGAGGCAGACCGAACCAAACGGAGAGCCACAAACAAAAGTCACATCTCCTTTTTGTAAATGAGAGCTGGACAGCCAAGGTGTGACCCGGTCGTCTTCCTCCAGCAAACCAGGAACCTTCAACAAAGCAAACCAACTTAAAAACCTGCTGTCCTTTTTCATCTCGTTCAGCTCAGCATCCTCTTCGTTACTGTTAAAACTCCACTTTTCTGACGTATTGAACACATTCTCGAAAGTCTCCTGAAATTCCTGACAGGACAGAAGCATGAGGAACTCTGCCTTTTGAGAGGACAGTCTGGGCTTGCTTTGAATGTCCATATTTGTTTGCCCATAGCATTGGTTCATTGCTTGACTTGGCATCCTCTGAGTATTGGCAATCTGGGTGTCTATTATATCATAATGCTGTATGTAAACCTGCAGTTTATTGCTGAAGCTCTCTGGAAACAAAACCTGGCAGTCAGAGAGGTTAATGTCTTTATTCATGAGAAATGAGGAGAACAAAAGACCATGGCAAACCACTATCCCAGACTGGGCATTCAGGAGAACCCCACTCCCGCTCAATGGCTCCTCTGCACAGCACCCTGATCCCAAATGTTGTGGGCAACCAAGTGTCTTCCCCCAGTTTGACTCCCCAGCTGCCTCAAAAACTGACACTACACAACACGTTTCTTCCATGGGTCCCATGCTGATTCAAAAAACGTTTGCAAGTATCTAAAGAGAAGCTCTTTTTCGTTAATGATCATTTAAAACGCCGTTCCAGAAAGTAATACATTGGGGTaagtttaaaacacacacaaacgtgGTGCAACAAGTACAAAATTCAAAACAGTATTCCTAcagaaatatgtaatgtttttatccaACACCTATAAACATTTGTTCCCAGTGTAAATGCTGTGAAACTGTTCtattatatgtatatgattCACACTATTTTAGAAATCCGCCTATATTTATGTCATTTACAACACAccgaaacaaatatatttaattgatattgtTAAATGATTACGTTACAGTGCCAAAGCAGGAATGTTTCTTCTACCGAGCTACCCGTGTCCAATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU175869 True 1547 lncRNA 0.43 1 8003904 8005450

Neighbor

gene id symbol gene type direction distance location
AMCG00002966 spock2,LOC108443083 coding upstream 5879 7955216 ~ 7998025 (+)
AMCG00002961 NA coding upstream 57380 7938432 ~ 7946524 (+)
AMCG00002954 NA coding upstream 140483 7847978 ~ 7863421 (+)
AMCG00002953 ndufb8,LOC102781364,LOC106577308 coding upstream 158034 7843544 ~ 7845870 (+)
AMCG00002959 NA coding upstream 174186 7828091 ~ 7829718 (+)
AMCG00002974 NA coding downstream 65534 8070984 ~ 8081794 (+)
AMCG00002973 LOC107595167 coding downstream 131290 8136740 ~ 8172504 (+)
AMCG00002976 NA coding downstream 200941 8206391 ~ 8213095 (+)
AMCG00002977 rps24,LOC102780737 coding downstream 224197 8229647 ~ 8234400 (+)
AMCG00002983 zmiz1,LOC103381918 coding downstream 471242 8476692 ~ 8487793 (+)
G139837 NA non-coding upstream 259 8003315 ~ 8003645 (+)
G139836 NA non-coding upstream 847 8002802 ~ 8003057 (+)
G139832 NA non-coding upstream 4645 7998213 ~ 7999259 (+)
G139827 NA non-coding upstream 50564 7953126 ~ 7953340 (+)
G139667 NA non-coding upstream 806807 7196878 ~ 7197097 (+)
G139850 NA non-coding downstream 14570 8020020 ~ 8021401 (+)
G139880 NA non-coding downstream 175855 8181305 ~ 8181534 (+)
G139906 NA non-coding downstream 274206 8279656 ~ 8280129 (+)
G139915 NA non-coding downstream 492564 8498014 ~ 8499226 (+)
G139916 NA non-coding downstream 493934 8499384 ~ 8507103 (+)
G139784 NA other upstream 77072 7923182 ~ 7926832 (+)
AMCG00002960 NA other upstream 82996 7909252 ~ 7920908 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other upstream 624417 7376687 ~ 7379487 (+)
AMCG00002939 ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527 other upstream 930366 7066855 ~ 7073538 (+)
G139492 NA other upstream 1850784 6147748 ~ 6153120 (+)
AMCG00002965 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 32127 8037577 ~ 8044413 (+)
AMCG00002982 NA other downstream 487555 8493005 ~ 8496965 (+)
AMCG00002996 NA other downstream 1231290 9236740 ~ 9244099 (+)
AMCG00002998 NA other downstream 1294861 9300311 ~ 9316633 (+)
G140030 NA other downstream 1320038 9325488 ~ 9330464 (+)

Expression


Co-expression Network