G139919 (zcchc24,LOC106608383,LOC107564348)


Basic Information

Item Value
gene id G139919
gene name zcchc24,LOC106608383,LOC107564348
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 8542727 ~ 8543283 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU175986
CTCATTCCTTTGGAGCTGCAAGAAGCTGTTGAGATAGTTGGGGTTGAGAGAGGAGCTCAGGTCAGCAGCAGGCTTGGTGTAGCTCAGATCCGCATGGGAGGAACTGGTCTCTGGTCTGAAGGCATCAAAGGCACTGGTTTGGTGGGTGTCTTGCAGAGACAAGTAGACCCAGTTCAGGAGCTGGGCAGGCTGGTACACAGAGGCACTGGTGTCTATGGCAGACAACAAGCTCATCTTTCCACAGATCTACTCGTTTTGTGAACAGATCACACCTTCTGGAGCTTGCTGTGCTACTTTCACTTAACTCCCCTTTGCAATGCAATGCTGTGCTTTCCCCCGCCCCGACAGTGTTTGtcttgtcctttttttttttttttttttttttctctcttccccccccccacggTTCTTGTCCTTCTGCTGGGATCTCAGTCCCTAGCTTCACGGTTACGCAAAAGCCATCGCCGAAAAGTTGTcggtttccaaaaaaaaaaaagtttgtgctCCAGCCTGCGATCCGCTATCTGCTTTATTTGCCCCAGCGCAGCAAGGAGCCT

Function

symbol description
zcchc24 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Orthologous to human ZCCHC24 (zinc finger CCHC-type containing 24).

NR:

description
PREDICTED: zinc finger CCHC domain-containing protein 24

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU175986 True 557 lncRNA 0.50 1 8542727 8543283

Neighbor

gene id symbol gene type direction distance location
AMCG00002983 zmiz1,LOC103381918 coding upstream 54934 8476692 ~ 8487793 (+)
AMCG00002977 rps24,LOC102780737 coding upstream 308327 8229647 ~ 8234400 (+)
AMCG00002976 NA coding upstream 329632 8206391 ~ 8213095 (+)
AMCG00002973 LOC107595167 coding upstream 370223 8136740 ~ 8172504 (+)
AMCG00002974 NA coding upstream 460933 8070984 ~ 8081794 (+)
AMCG00002984 anx11,LOC100702381,LOC101468000,LOC102303799,LOC102214080,LOC102778943 coding downstream 10296 8553579 ~ 8564616 (+)
AMCG00002989 dlg5 coding downstream 41211 8584494 ~ 8635277 (+)
AMCG00002990 NA coding downstream 98632 8641915 ~ 8642438 (+)
AMCG00002991 kcnma1,LOC102213110,LOC106949528,LOC106919544,LOC107676421,LOC102314531,LOC106517014,LOC108243866 coding downstream 196455 8739738 ~ 8770076 (+)
AMCG00002992 LOC108263740,LOC103386992,LOC106613356 coding downstream 251524 8794807 ~ 8817964 (+)
G139918 LOC105903367,LOC108245402 non-coding upstream 6353 8536080 ~ 8536374 (+)
G139917 NA non-coding upstream 34244 8507877 ~ 8508483 (+)
G139916 NA non-coding upstream 35624 8499384 ~ 8507103 (+)
G139915 NA non-coding upstream 43501 8498014 ~ 8499226 (+)
G139906 NA non-coding upstream 262598 8279656 ~ 8280129 (+)
G139995 NA non-coding downstream 306896 8850179 ~ 8851686 (+)
G139997 NA non-coding downstream 377185 8920468 ~ 8920730 (+)
G139998 NA non-coding downstream 389467 8932750 ~ 8932969 (+)
G139999 c3h10orf11,c13h10orf11,LOC107690203,LOC107747465,LOC107582503,LOC107678567 non-coding downstream 415456 8958739 ~ 8960425 (+)
G140002 NA non-coding downstream 603018 9146301 ~ 9146572 (+)
AMCG00002982 NA other upstream 45762 8493005 ~ 8496965 (+)
AMCG00002965 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other upstream 498314 8037577 ~ 8044413 (+)
G139784 NA other upstream 615895 7923182 ~ 7926832 (+)
AMCG00002960 NA other upstream 621819 7909252 ~ 7920908 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other upstream 1163240 7376687 ~ 7379487 (+)
AMCG00002996 NA other downstream 693457 9236740 ~ 9244099 (+)
AMCG00002998 NA other downstream 757028 9300311 ~ 9316633 (+)
G140030 NA other downstream 782205 9325488 ~ 9330464 (+)
G140189 NA other downstream 1234967 9778250 ~ 9780452 (+)
AMCG00003019 NA other downstream 1301493 9844776 ~ 9853453 (+)

Expression


Co-expression Network