G139933 (LOC108443181)


Basic Information

Item Value
gene id G139933
gene name LOC108443181
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 8485361 ~ 8494596 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU176000
GCTCATTCATACTAGTTTCCATTTTTtgaataatagttttaataatctctctctctctctcactctctctctcacacacacacacacacacacacacacacatgattaAACACATACCAGGTCCTGCATGTTGCAATTTGAAGTTCTCATCTGGGAATCTGGGTCCATAGATGGATTTTCCTCCAGTGCCATTATGATTGGTGAAATCTCCACCCTAATCCCACAGGGTAAAGGAAGCATACATTACATTCAACTTGTTTAATAAGGctgaacaaaaacaactgaattTCTGGTGAAAGTTTAAGAGTAAGGTTACAAACACTGCAGCCACTGAGCATGCCTGGTCCTGCCTGACCTCTAAAGAATGAGAATCTAAACTTGAGCAGCTCTGGGCAACTGGCAAACCCAGAAAGATGAAAAGTACCTGGCACATGAACTGCGGAATCACACGGTGGAATATCGATCCTTTGTACCCGAAGCCCATTTCTCCTGTGCAGAGGACTCGGAAGTTTCTGCTGTTTTGGGGACCACATCAGCATTCAACTGCAACAGAGAACTTAATTAGGAGTGGCAGTCAAACagtgcaagaaaagaaaagcactaGGCCCTGTCGCTCTGAGGTGATATCGTGACAATATATCGCGCCACTGAAACCGAGAATGACGTTTCAGGAACTCAAGCAACCGCGACTTCTCAAACAGGGCTGAGGTTATGGTTATAGAGTTGTGCTTGAATCGATGCAGTGGGCGAAATCATCATTTACAATACATAAACTGGCTTTATGGTTATCATATTAAAAACGGAGACTTATTTTGATGACTGCCCACATGTTGCATTAAAAACCAAACTGCATTATGCAGAGGTCAGAAACCAGCATGATCCGCGTTAACTCTTCAGTAACGACCAGTCCTTTTAGAGGCACTTgaaacaccaccaccaaagcacagTGGCGCTTATCCATTACTACCGTGCGTTACACACATCTGCAGTGAAGGTGTAGACGTGTTTACACACAGCGCTCAACTGTGCGCAGGTGCAGATGCCGGCTCTGTACCTCGAAGGTGACTCTCCCCAGAGGCTCGTTGTCCGCGGCGATGTCAAAATAAACCACGGGGTTTTTCACCGGGCTGGAGCTGCACAGCCGGGCCGCGGCCAGCGACAGGGGGGCGCTTTTCAGCAGCCCTCCGGCATTACACCGAAGAAACAGACCTGTGAAGGGCAACATTGTCGCAGCGTGAATCCCGCAACCAACGACTTCTGAAATGCCGCTACATCCAGGAAGTACTACGTACAGCACATTTCCGGAGGCCTGcgcagttttgcacagttttGCAGAGATGCGCATCCTTCGAGGGCTGCTGCGTGACGTCACTAAAGTCCGCCCACAGTCTCCAGCGCAGCTCTGGTCGCGGTCCAGTGACACAcattctgcgcagatctgctgTATCGCcacgatcccattggtggagcagcgcagggCTGCGGGAAAGGCGAGCAGCAGCTCTGCGCAGGCGGGCGGGAACACAGAAGATCTGTCAGTGACAGAGAAGAGGAGCCCAGGATGAGTTTATTCCAGACTCCTACCTTGGCTGCCATATTCACTGCTGTTTCCTCCGGGTGGAGGAGGTAGCGAGGGGTACGGAGACGGACCTGGACCGAGAGCTGCAATCATTTCCATCACATTGGGCATGATCATCTGGCTGGGACTCATAGTCTTGAACCTCTTGGCCAGTGGTCCATCTGGGTCTTCTTTGATGTGCATGTCTGATTTAATCGGCACCGGCCTCCAACTACATGTCGGGTCGATGGTGACCTCCTCAAACTCAGAG

Function

NR:

description
PREDICTED: zinc finger MIZ domain-containing protein 1-like isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU176000 True 1829 TUCP 0.50 3 8485361 8494596

Neighbor

gene id symbol gene type direction distance location
AMCG00002979 polr3a coding downstream 256232 8214896 ~ 8229129 (-)
AMCG00002980 NA coding downstream 282047 8198676 ~ 8203314 (-)
AMCG00002978 NA coding downstream 289469 8183455 ~ 8195892 (-)
AMCG00002981 NA coding downstream 308468 8174912 ~ 8176893 (-)
AMCG00002975 NA coding downstream 436927 8045215 ~ 8048434 (-)
AMCG00002986 zcchc24,LOC108245402,LOC104967378,LOC105029870,LOC103133498 coding upstream 11093 8505689 ~ 8508352 (-)
AMCG00002985 zcchc24,LOC107564348,LOC106577169 coding upstream 34599 8529195 ~ 8542960 (-)
AMCG00002987 NA coding upstream 75622 8570218 ~ 8570907 (-)
AMCG00002988 NA coding upstream 76992 8571588 ~ 8580373 (-)
AMCG00002993 NA coding upstream 415839 8910435 ~ 8967149 (-)
G139902 rps24,LOC106591086 non-coding downstream 251077 8230369 ~ 8234284 (-)
G139881 NA non-coding downstream 303785 8181290 ~ 8181576 (-)
G139867 NA non-coding downstream 370116 8111025 ~ 8115245 (-)
G139825 NA non-coding downstream 538840 7946052 ~ 7946521 (-)
G139752 NA non-coding downstream 1026870 7455544 ~ 7458491 (-)
G139937 NA non-coding upstream 258 8494854 ~ 8495297 (-)
G139960 dlg5 non-coding upstream 122839 8617435 ~ 8618101 (-)
G140005 NA non-coding upstream 355073 8849669 ~ 8850559 (-)
G140007 NA non-coding upstream 438174 8932770 ~ 8932969 (-)
G140009 znf503,LOC107708443,LOC101070189 non-coding upstream 656220 9150816 ~ 9156562 (-)
AMCG00002970 cj104,anapc16 other downstream 547120 7931166 ~ 7938241 (-)
AMCG00002945 NA other downstream 1132540 7348811 ~ 7352821 (-)
AMCG00002935 LOC106589936 other downstream 1419011 7062473 ~ 7066350 (-)
G138932 NA other downstream 4482557 4001650 ~ 4002804 (-)
AMCG00002828 NA other downstream 4532037 3928761 ~ 3953324 (-)
G140006 NA other upstream 352436 8847032 ~ 8847840 (-)
G140015 NA other upstream 742062 9236658 ~ 9237730 (-)
AMCG00003017 NA other upstream 1102347 9596943 ~ 9607316 (-)
AMCG00003049 NA other upstream 1807204 10301800 ~ 10331372 (-)
AMCG00003110 LOC107699307,LOC108442385,LOC108263686,LOC107727357,LOC105890865,LOC104955882 other upstream 3113867 11608463 ~ 11622649 (-)

Expression


Co-expression Network