G139937



Basic Information


Item Value
gene id G139937
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 8494854 ~ 8495297 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>TU176008
tttaaattgttatttctaAACATGAGCCAGTGGAAAACAAACTTGAGAAATaccttaaatatatacatatttgaagtatttttattCACAGTTGCAACAAGTTTTGAAAATCAAAGTGGAGCTATTCGAGTTGTCCGCACTCGGTGATGACTATCTTCTTGGAAGTGCTCCCAGATCGAGATCCTAATTTTTCCACTTTTGAGATCACATCCATTCCTTTCATTACGTTGCCGAAAACGACATGCTTCCCATTCAAAGTCAGTTTTTGCAGTGCAGATGAAGAACTGAGATCCATTGGTATTTGGTCCAGCGTTCGCCATTGACAGAACACCTACACAAAGAGTTGGTGAAC

Function


GO:

id name namespace
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko03010 Ribosome
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

RNA


RNA id representative length rna type GC content exon number start site end site
TU176008 True 352 lncRNA 0.38 2 8494854 8495297

Neighbor


gene id symbol gene type direction distance location
AMCG00002979 polr3a coding downstream 265725 8214896 ~ 8229129 (-)
AMCG00002980 NA coding downstream 291540 8198676 ~ 8203314 (-)
AMCG00002978 NA coding downstream 298962 8183455 ~ 8195892 (-)
AMCG00002981 NA coding downstream 317961 8174912 ~ 8176893 (-)
AMCG00002975 NA coding downstream 446420 8045215 ~ 8048434 (-)
AMCG00002986 zcchc24,LOC108245402,LOC104967378,LOC105029870,LOC103133498 coding upstream 10392 8505689 ~ 8508352 (-)
AMCG00002985 zcchc24,LOC107564348,LOC106577169 coding upstream 33898 8529195 ~ 8542960 (-)
AMCG00002987 NA coding upstream 74921 8570218 ~ 8570907 (-)
AMCG00002988 NA coding upstream 76291 8571588 ~ 8580373 (-)
AMCG00002993 NA coding upstream 415138 8910435 ~ 8967149 (-)
G139902 rps24,LOC106591086 non-coding downstream 260570 8230369 ~ 8234284 (-)
G139881 NA non-coding downstream 313278 8181290 ~ 8181576 (-)
G139867 NA non-coding downstream 379609 8111025 ~ 8115245 (-)
G139825 NA non-coding downstream 548333 7946052 ~ 7946521 (-)
G139752 NA non-coding downstream 1036363 7455544 ~ 7458491 (-)
G139960 dlg5 non-coding upstream 122138 8617435 ~ 8618101 (-)
G140005 NA non-coding upstream 354372 8849669 ~ 8850559 (-)
G140007 NA non-coding upstream 437473 8932770 ~ 8932969 (-)
G140009 znf503,LOC107708443,LOC101070189 non-coding upstream 655519 9150816 ~ 9156562 (-)
G140014 NA non-coding upstream 740725 9236022 ~ 9236302 (-)
G139933 LOC108443181 other downstream 258 8485361 ~ 8494596 (-)
AMCG00002970 cj104,anapc16 other downstream 556613 7931166 ~ 7938241 (-)
AMCG00002945 NA other downstream 1142033 7348811 ~ 7352821 (-)
AMCG00002935 LOC106589936 other downstream 1428504 7062473 ~ 7066350 (-)
G138932 NA other downstream 4492050 4001650 ~ 4002804 (-)
G140006 NA other upstream 351735 8847032 ~ 8847840 (-)
G140015 NA other upstream 741361 9236658 ~ 9237730 (-)
AMCG00003017 NA other upstream 1101646 9596943 ~ 9607316 (-)
AMCG00003049 NA other upstream 1806503 10301800 ~ 10331372 (-)
AMCG00003110 LOC107699307,LOC108442385,LOC108263686,LOC107727357,LOC105890865,LOC104955882 other upstream 3113166 11608463 ~ 11622649 (-)

Expression



Co-expression Network