G139998


Basic Information

Item Value
gene id G139998
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 8932750 ~ 8932969 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU176093
CCTCACTCctgttagaagtgactcctctaatcgacaccctctgtttcctagacatcaaccagttcataatccatctacttacattaccctgaatgcctacagcttccaatttgaggatcagtctttggtgtggaaccttatcaaaagctttttggaaatctaagtatatcatatcatatgctttcacgtgatctacagctgcagttgcatgttcaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU176093 True 220 lncRNA 0.40 1 8932750 8932969

Neighbor

gene id symbol gene type direction distance location
AMCG00002992 LOC108263740,LOC103386992,LOC106613356 coding upstream 114786 8794807 ~ 8817964 (+)
AMCG00002991 kcnma1,LOC102213110,LOC106949528,LOC106919544,LOC107676421,LOC102314531,LOC106517014,LOC108243866 coding upstream 162674 8739738 ~ 8770076 (+)
AMCG00002990 NA coding upstream 290312 8641915 ~ 8642438 (+)
AMCG00002989 dlg5 coding upstream 297473 8584494 ~ 8635277 (+)
AMCG00002984 anx11,LOC100702381,LOC101468000,LOC102303799,LOC102214080,LOC102778943 coding upstream 368134 8553579 ~ 8564616 (+)
AMCG00002994 znf503,LOC107708443,LOC103355656,LOC102798683 coding downstream 220995 9153964 ~ 9156135 (+)
AMCG00002995 NA coding downstream 335948 9268917 ~ 9273158 (+)
AMCG00002997 NA coding downstream 383762 9316731 ~ 9325141 (+)
AMCG00003002 LOC108426803,LOC107743512,LOC107726964,LOC107655430,LOC107559324,LOC107601875 coding downstream 561082 9494051 ~ 9508297 (+)
AMCG00003008 NA coding downstream 629311 9562280 ~ 9575635 (+)
G139997 NA non-coding upstream 12020 8920468 ~ 8920730 (+)
G139995 NA non-coding upstream 81064 8850179 ~ 8851686 (+)
G139919 zcchc24,LOC106608383,LOC107564348 non-coding upstream 389467 8542727 ~ 8543283 (+)
G139918 LOC105903367,LOC108245402 non-coding upstream 396376 8536080 ~ 8536374 (+)
G139917 NA non-coding upstream 424267 8507877 ~ 8508483 (+)
G139999 c3h10orf11,c13h10orf11,LOC107690203,LOC107747465,LOC107582503,LOC107678567 non-coding downstream 25770 8958739 ~ 8960425 (+)
G140002 NA non-coding downstream 213332 9146301 ~ 9146572 (+)
G140156 NA non-coding downstream 797679 9730648 ~ 9730863 (+)
G140188 NA non-coding downstream 834117 9767086 ~ 9773065 (+)
G140190 NA non-coding downstream 848965 9781934 ~ 9785792 (+)
AMCG00002982 NA other upstream 435785 8493005 ~ 8496965 (+)
AMCG00002965 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other upstream 888337 8037577 ~ 8044413 (+)
G139784 NA other upstream 1005918 7923182 ~ 7926832 (+)
AMCG00002960 NA other upstream 1011842 7909252 ~ 7920908 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other upstream 1553263 7376687 ~ 7379487 (+)
AMCG00002996 NA other downstream 303771 9236740 ~ 9244099 (+)
AMCG00002998 NA other downstream 367342 9300311 ~ 9316633 (+)
G140030 NA other downstream 392519 9325488 ~ 9330464 (+)
G140189 NA other downstream 845281 9778250 ~ 9780452 (+)
AMCG00003019 NA other downstream 911807 9844776 ~ 9853453 (+)

Expression


Co-expression Network