G140030


Basic Information

Item Value
gene id G140030
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 9325488 ~ 9330464 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU176137
TTGACATTCCACGACCCTTGGGACACCCAAAGATCTCAGATTACACAGCTACATTATATTATTCCTCGCCCCTCAGCAAGATGTATCAGTTTTCTCTTTAACTGCAGCTCACATCTTCATTAACTCTTCCTTGACAATTCATCTTAAGCAATACAGGTATTTTCAGGACAAGACAAGCTCCCAGACATTTTACAAAAGACAGCAGTCCATAAATGGCtcatcataatttattttatgctaaaatgtacagcattttttaaGTGACTGACTAAAAAGATAACTCATAAATACAAGACTGTCATTCTGTCCTATTTTGTACACATATCCAGGTTTCCCTCTCATTCCTACCAGTCACTCTGTACAGGTACAAAGGCtacaaaaaagcaatataaacagacacaaatacaATTTGCTTTTTACATGCGATTTGTTAGCTTAGTTTGGTCTATTCACAGGCTACTGCTCTAcgcttttgtaaaatataaatccaacattttataaagatagaaaaaaatctacagatggaatgaaaatgtaagtttAAAGGCATTTTCATAAAATAGCAACTTTGGACTAAATGTacgtttgttttctctttattcTGCCACATTTCTGGACATGTTCGGTGAAATGCTTTAGAATCGTATGGGTACAAACACTGAGATATGCTTCATTATTTAGACAGAAATCAGTTTGCATTATAAAACGGAAAGCTGCCTCATTTAAGGAAATTTGTTACAAAAAGTACTGAATTATACACATTTAGCaataaaacctttcaaactGAACAACTGAAACGAGACTAAGTTTTACAATTTTTACAGTATTagaattaacaaaaatatagtttaatctTCCTCCCAGTACAGGGAAACCTAAATCAAGGCCATAAATTCTTAAAATGGCTTGCTATTAAGCACAACACTTGTACAGTACTACTTAATGCACTGTCACTAACAAAGACGTCGTAGCATGCTAAGTGTCaccttacaaaaaataaaacgaaaatgtacaataatttaaatatataaaggcATAAGTATGGAACAAAATCTAAATTTCAGTACTGCTGGACAGGTACACGTAAAAGGCTCTAATGtccaaaatattatatttgtagcAGGCACATTAAATGGCTCCATTATACAGGCTGCTACAAAACTGCAGTCTCCCCCCACTGAAGCCCCCGTTCAGTACAGCTCAGTATATCACAGGCTGCTGCGCTCATCAAAGGAGAATAACACGAACCAAACAAAAGTCATCTTCATTTTGATGATGTAAGGcttcccattaaaaaaacatttttttccaacaaaaagacttttttttttgcattcatacCAAGTGCtggttatttttagtttttttttaaagaaaagaaaaacaaaagaaaaaagtttccACAAAACGGTGCTCCAGGCATAGTTGTGCATTTTGGATACTATGCACTTCGATTGATAGTTACCAGGATCCAACTAACGCCTCATGAAGGGTCCGTTTAGAGGCTGTTTAGACATGCCCGTGTTCATGTACCCATGATGGCCTGCTGGCGTGTACATCATGTTGCTGTGTGGCGGGCCTTGCATGGGTTGCTGGGGGTATGGCTGCGTTCCCATCATTCCCATCTGCATAGAGTACTGTGGGGACTGATTCATGTATGCCGCGTGGTTTCCATGATAGCTGCTGTTCATCATCGGCTGAGTCATCCTGTAGCCGTTCATTGCATTAAGGgggttcatgttcatgttcatcgAGTTGACGTTGTACGCTGGTGCGGGCATGAGATTCACGCCCATGTTCATCCGTGGCATGGCTAGCGTCCGAGCAGGGGCCTGCATTGCCACCGACTGTGAAGCCCGTCCGTACATCTGCTGCTGATGATGGGGCAGCGGCGCCGATTTAGAGCGCATCGAAACGTGGCCCTTGACTGGCATCTGCGTCTGCAGCCTCTGGGAAGGCGGGATTCCTATGTTTGGTGCAGCCATGTTACGTTGCAATAGAGAGGGAGGCAGATTCATGGGCGGAGGGGTCAGGTTGGGTGGAGGGGTCATGGTGGCCTGTGTCTGGGGTCCCCCCGGGACAGAATGcggagactgagagagagaaacgagACCTGTGTTGCTCAGCGgtgaagacagagagacactgtTTGCATAGGATGTGACAGAAGCTGAATGGTTATAAGGCAATGGATGATCCATCAGAGTGTTGGTTAATTGCTGTAGTTTTGCCAAGCTAAAGGTTGCTGATGGCTGTGAATAATGTCCACCACCATAATCACTTTGGCTCATCCTCTCGTAAATGCCAATATTTGGGTTGCCAGTCTCTGGGATATCGGACAACTGCATTGGTGATGCGAAGTTGGTAGGCATGCCACACTGTGACAGCTGTTGCTGGGTATTGCTTGGGGGTCTTTCCACAACACACCCTTGGGGCGATTTGACACTGCAGTTCTGTGGAGAGTTAATACTGTTCTGTTGAATCATGCTACAGCTCCCGTTAATGTTGGCCATCTGCTGGGTCACTGCACAGCTGCTCTGAGAAAGGCTACTGGAGGAAATGTTACTGTATGAGCAACTATTCTGGGAAGAGTTATTTCCACAAATGCTGCCACCTAACGTTGAATCATAGCTACTAGGGTTTTCGTAATTTTCTGTTGTGCTCTCAATACTGCCAAGATCACtaaatccactgtcaacaacctgCTGAGAATGGTCTGAAACTGAAGGGACATCCATCATTGGGCTGGTTTCCATATTTTGCAAAGATGGCACTGAAATAGCACTCTGATCAGGGCTGATTTGTGTATAGCTGTTCTCTAGAACAGAAACGGCCGGGCTATTTACAGaacgcactgactgactgggaTGAGAGTGCACCGACGATATAGGGCTGCTGTGGTCGGACTGCTGACAATCATCCATGGTGGCCATCTGAGGGCTTTGGTCAGCGTGAGCATAGCTTTGCAAGCTTCTACACGCTTCCTGTGTTTCCACACAGTCCTGGAAATTGCTTTCTTGCTCATTTTCCTGGGTGAGGGACTGTACTGCTTGTACCGTTTCGGTGTCAATTTCCGTGCAAATGGTATGATCCTCTTTTATTACAGGGCTCAAGGATTCACTCTCCTTTTGGTCAAGGTCATTATTGTTCTCGTCGTCCGACTCGGACTCCGGCGGATGATCAGAGTCCACAATGTTCTCGTTAACTTCATCACTCATATCAGGAGCCAGATCTTCACTACAGTTCACAGTTTGATCGTTATTTTGCACTTCATTGTTCGCAACATGAAGGTCTAAAAAAGCTTCTGGATACTCGGGCTGCTCTTTCAAGGCCTCTGCAGTACTCTCCTCTTTTTCCAGCTCGGTTGAATCTACATGACTGTCATCCTCATCATCTGCGTCGTGATCCTCGTTATGCACTGGATCTTCTTCGTCGTCGTCGTCTTCCTCATGCTCCTCCGCATGTGAAGCGGGCTCCTGCTCCTCTACTATATTCTCCCCTTCTTCATGGTCATCCTCTGCGTGATCAAGTGCTTCCTGGGCCTCGTCGTGGCTGTACACGTCTTCTGGAGAACCTAGTTTCTCGAAAAACTCCTGCTTTTTCGGAAGCAACTCTTCGGGACTCTGCGACTCGGAGAGAAGTTTCTCAAGCTCTGTATCCAATGGTTCAATCTCTCGGCCCGGCTCGCTGTCCTCCTCTGTGATTGCAGGAGCCTTTCCGTGGTCCTCCTTCAGTTCTTCTGCCAAAATCTGGTGGTCTGCCTCCATAGGAGTTTCAGGTGGGGTGTACAGATTCAACTTGAAGCCCATCTTTCGTTCCTTCTTCAGTCTCCACTTGGGTGGGCCACGTTTCACCCCTTTTGGCCAGCCTTTCTTACGCTTAACAGGTTGAGGATTGTCTTCTTTTTTCACAGGTCCATTTGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU176137 True 3924 TUCP 0.44 2 9325488 9330464

Neighbor

gene id symbol gene type direction distance location
AMCG00002997 NA coding upstream 347 9316731 ~ 9325141 (+)
AMCG00002995 NA coding upstream 52330 9268917 ~ 9273158 (+)
AMCG00002994 znf503,LOC107708443,LOC103355656,LOC102798683 coding upstream 169353 9153964 ~ 9156135 (+)
AMCG00002992 LOC108263740,LOC103386992,LOC106613356 coding upstream 507524 8794807 ~ 8817964 (+)
AMCG00002991 kcnma1,LOC102213110,LOC106949528,LOC106919544,LOC107676421,LOC102314531,LOC106517014,LOC108243866 coding upstream 555412 8739738 ~ 8770076 (+)
AMCG00003002 LOC108426803,LOC107743512,LOC107726964,LOC107655430,LOC107559324,LOC107601875 coding downstream 163587 9494051 ~ 9508297 (+)
AMCG00003008 NA coding downstream 231816 9562280 ~ 9575635 (+)
AMCG00003009 LOC108263345,LOC107725471,LOC107666491,LOC107601865,LOC108426813 coding downstream 249135 9579599 ~ 9583885 (+)
AMCG00003007 NA coding downstream 299348 9629812 ~ 9633358 (+)
AMCG00003018 NA coding downstream 411974 9742438 ~ 9742839 (+)
G140002 NA non-coding upstream 178916 9146301 ~ 9146572 (+)
G139999 c3h10orf11,c13h10orf11,LOC107690203,LOC107747465,LOC107582503,LOC107678567 non-coding upstream 365063 8958739 ~ 8960425 (+)
G139998 NA non-coding upstream 392519 8932750 ~ 8932969 (+)
G139997 NA non-coding upstream 404758 8920468 ~ 8920730 (+)
G139995 NA non-coding upstream 473802 8850179 ~ 8851686 (+)
G140156 NA non-coding downstream 400184 9730648 ~ 9730863 (+)
G140188 NA non-coding downstream 436622 9767086 ~ 9773065 (+)
G140190 NA non-coding downstream 451470 9781934 ~ 9785792 (+)
G140192 NA non-coding downstream 457283 9787747 ~ 9788069 (+)
G140223 NA non-coding downstream 608392 9938856 ~ 9960116 (+)
AMCG00002998 NA other upstream 8855 9300311 ~ 9316633 (+)
AMCG00002996 NA other upstream 81389 9236740 ~ 9244099 (+)
AMCG00002982 NA other upstream 828523 8493005 ~ 8496965 (+)
AMCG00002965 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other upstream 1281075 8037577 ~ 8044413 (+)
G139784 NA other upstream 1398656 7923182 ~ 7926832 (+)
G140189 NA other downstream 447786 9778250 ~ 9780452 (+)
AMCG00003019 NA other downstream 514312 9844776 ~ 9853453 (+)
AMCG00003066 LOC105931228,LOC105012084,LOC107588449,LOC107706116,LOC108435714,LOC103374338,LOC103154480 other downstream 1350307 10680771 ~ 10683612 (+)
G140478 nkx23,LOC106591187,LOC101065636,LOC101073339,LOC101063040,LOC104962797 other downstream 1424437 10754901 ~ 10756840 (+)
G140613 NA other downstream 1879109 11209573 ~ 11212111 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_12381049_12417489 KAT6B coding CI01000012 null 12380192 ~ 12418697 (+)