G140189


Basic Information

Item Value
gene id G140189
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 9778250 ~ 9780452 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU176317
CATTTCACTTCACATGTTTAACCATGAAGTTCATACTTAAAATGTGCAGCCTCATTCTGGCAGTTGCAGTAATTCAACTCCTTCAAGCTCCTCTGGGAGAAGCACAATTCGTTCCAACAAGATGCATGTGTGtaaaaagtgaaacaatattTCGTCGACGCTTCACCAATTTTACTGTAATAGAAAAAGGATCGCACtgtaaaaatactgaaatcatACTGACTCTGGACAAGTCTGGTCACCAAGTATGTCTAAGTCCTGATGGACAACGAGGCCAGAGGCTACTCAAATGCTGGAACAGgataaataaagatgaaagcaagaagaaaaaatgcattcGAAGAAGGCAAAAAAAAGTCACAGAGAAAGGGAACAAGGAATCCAATAGCAGAAACATTGTGAATCCTCAGCTGTCGCATGACTAATAACAGAGACATTTGAGGGGGGTAACAATAAGGAAGAATGAATGTAGAAGGCAAGGAGAGCTGGAGTACTGAAAAATTACTTGCCATGCTGTGATATGTTGGTTAAAAAGTCTGTCCCTTTctatgtacatgtgtgtgttcagaaaGATGCactttaaaaggttaaaagcaAACTATTCAGGGATGTATTCCATCACTATTATGTTACTGAAAACCATGATATAAAGGTCTGGTGGGATATATGAGAGCCAGATCAATCTAACATTTCATGGCAGCATAGGACAGTTTAGTTTCTTTTGAATGTTGTTCACAAATCACATTGCATTCACTCCATTTGGGCAATGTTATTAATAAAGGCCCCATTGTAGAGGGTACActtaatctttaaaaatgtcctcTGCACTGCAGCTGAGCTTCCTACCGGTGCTGGTGCTGGCCAGGAGTTCACATGGTGCACAATTGGTGGGTGAAACGTAGCCCCAGCAGGGTTGGGgtttgggatttgtttttattttttatatttaataattattttatactacatttaaaaaaaaatcaacatcaatgtgcttgttttttatGGTCTGTTAAATAAAATTTTGTACTTTCTCAGTTAATAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0015935 small ribosomal subunit cellular_component

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU176317 True 1045 TUCP 0.38 4 9778250 9780452

Neighbor

gene id symbol gene type direction distance location
AMCG00003018 NA coding upstream 35411 9742438 ~ 9742839 (+)
AMCG00003007 NA coding upstream 144892 9629812 ~ 9633358 (+)
AMCG00003009 LOC108263345,LOC107725471,LOC107666491,LOC107601865,LOC108426813 coding upstream 194365 9579599 ~ 9583885 (+)
AMCG00003008 NA coding upstream 202615 9562280 ~ 9575635 (+)
AMCG00003002 LOC108426803,LOC107743512,LOC107726964,LOC107655430,LOC107559324,LOC107601875 coding upstream 269953 9494051 ~ 9508297 (+)
AMCG00003020 NA coding downstream 120815 9901267 ~ 9920544 (+)
AMCG00003023 LOC107552681 coding downstream 143229 9923681 ~ 9926024 (+)
AMCG00003024 drgx,LOC107548637,LOC107673892,LOC107588616,LOC107708289,LOC107668808 coding downstream 148987 9929439 ~ 9937381 (+)
AMCG00003026 NA coding downstream 185504 9965956 ~ 9976662 (+)
AMCG00003025 NA coding downstream 216114 9996566 ~ 9997258 (+)
G140188 NA non-coding upstream 5185 9767086 ~ 9773065 (+)
G140156 NA non-coding upstream 47387 9730648 ~ 9730863 (+)
G140002 NA non-coding upstream 631678 9146301 ~ 9146572 (+)
G139999 c3h10orf11,c13h10orf11,LOC107690203,LOC107747465,LOC107582503,LOC107678567 non-coding upstream 817825 8958739 ~ 8960425 (+)
G139998 NA non-coding upstream 845281 8932750 ~ 8932969 (+)
G140190 NA non-coding downstream 1482 9781934 ~ 9785792 (+)
G140192 NA non-coding downstream 7295 9787747 ~ 9788069 (+)
G140223 NA non-coding downstream 158404 9938856 ~ 9960116 (+)
G140250 NA non-coding downstream 198780 9979232 ~ 9979445 (+)
G140260 NA non-coding downstream 222380 10002832 ~ 10003519 (+)
G140030 NA other upstream 447786 9325488 ~ 9330464 (+)
AMCG00002998 NA other upstream 461617 9300311 ~ 9316633 (+)
AMCG00002996 NA other upstream 534151 9236740 ~ 9244099 (+)
AMCG00002982 NA other upstream 1281285 8493005 ~ 8496965 (+)
AMCG00002965 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other upstream 1733837 8037577 ~ 8044413 (+)
AMCG00003019 NA other downstream 64324 9844776 ~ 9853453 (+)
AMCG00003066 LOC105931228,LOC105012084,LOC107588449,LOC107706116,LOC108435714,LOC103374338,LOC103154480 other downstream 900319 10680771 ~ 10683612 (+)
G140478 nkx23,LOC106591187,LOC101065636,LOC101073339,LOC101063040,LOC104962797 other downstream 974449 10754901 ~ 10756840 (+)
G140613 NA other downstream 1429121 11209573 ~ 11212111 (+)
G140693 NA other downstream 1705739 11486191 ~ 11487884 (+)

Expression


Co-expression Network