G140190


Basic Information

Item Value
gene id G140190
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 9781934 ~ 9785792 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU176318
AAACACTTGATATGGGCATCCAGGAAGTTAGGAAACACTGAACAACAAGGATCTGCTCAGCAAAGCATTCAGTCCTTTTGCAACAGAAGAACCAGAAAAATGATTTTCAATGTCTCAGCagcttttcttcttttactGTGCTTCACATCCTTAAATACAGATCAGATCACAGAAGCAAGCTTCGTTCGTGAGAGATGTGACTGTGTCAATACTGTCGACTGtgtccaaaaaagaaaaatatccaATTTCACTGTGATTGAGAAATCCTCCCAATGCAAGAATGTTCAAATCATACTCAATatcagaaacaaacaactgCTTTGTCTTAATCCAAATAAGAAACTAGGAAAAATACTGCAAAGATGTTGGCATAGaactaAGAACAGTCCAGAAAGAAATAAAGTGTGTTTGCAAAGGAAAGCTGGAGGAGGCTGTGGGGTGAAGAAGCCATCGTAGCAAGGAGAAAGATTGTATGTGTGAATGGCTTTCACCATTTATTCCAGAATCTCAAATGTAGCGTATATAcaacaattacagctgcaaatATATGCTGAATACTACTTCTATATGCTTCTACATACCAAGTGAACTGCTCAGACACACATAGAATGCATCTAAATGTATCCATATATCACACTAAATgtatccaaatatatttttatatattattgatttttgattatttttgagaataataattaaataaaattacataaatgtcaCTGCTGCTTTTAA

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
TU176318 True 735 lncRNA 0.35 4 9781934 9785792

Neighbor

gene id symbol gene type direction distance location
AMCG00003018 NA coding upstream 39095 9742438 ~ 9742839 (+)
AMCG00003007 NA coding upstream 148576 9629812 ~ 9633358 (+)
AMCG00003009 LOC108263345,LOC107725471,LOC107666491,LOC107601865,LOC108426813 coding upstream 198049 9579599 ~ 9583885 (+)
AMCG00003008 NA coding upstream 206299 9562280 ~ 9575635 (+)
AMCG00003002 LOC108426803,LOC107743512,LOC107726964,LOC107655430,LOC107559324,LOC107601875 coding upstream 273637 9494051 ~ 9508297 (+)
AMCG00003020 NA coding downstream 115475 9901267 ~ 9920544 (+)
AMCG00003023 LOC107552681 coding downstream 137889 9923681 ~ 9926024 (+)
AMCG00003024 drgx,LOC107548637,LOC107673892,LOC107588616,LOC107708289,LOC107668808 coding downstream 143647 9929439 ~ 9937381 (+)
AMCG00003026 NA coding downstream 180164 9965956 ~ 9976662 (+)
AMCG00003025 NA coding downstream 210774 9996566 ~ 9997258 (+)
G140188 NA non-coding upstream 8869 9767086 ~ 9773065 (+)
G140156 NA non-coding upstream 51071 9730648 ~ 9730863 (+)
G140002 NA non-coding upstream 635362 9146301 ~ 9146572 (+)
G139999 c3h10orf11,c13h10orf11,LOC107690203,LOC107747465,LOC107582503,LOC107678567 non-coding upstream 821509 8958739 ~ 8960425 (+)
G139998 NA non-coding upstream 848965 8932750 ~ 8932969 (+)
G140192 NA non-coding downstream 1955 9787747 ~ 9788069 (+)
G140223 NA non-coding downstream 153064 9938856 ~ 9960116 (+)
G140250 NA non-coding downstream 193440 9979232 ~ 9979445 (+)
G140260 NA non-coding downstream 217040 10002832 ~ 10003519 (+)
G140263 NA non-coding downstream 232186 10017978 ~ 10018198 (+)
G140189 NA other upstream 1482 9778250 ~ 9780452 (+)
G140030 NA other upstream 451470 9325488 ~ 9330464 (+)
AMCG00002998 NA other upstream 465301 9300311 ~ 9316633 (+)
AMCG00002996 NA other upstream 537835 9236740 ~ 9244099 (+)
AMCG00002982 NA other upstream 1284969 8493005 ~ 8496965 (+)
AMCG00003019 NA other downstream 58984 9844776 ~ 9853453 (+)
AMCG00003066 LOC105931228,LOC105012084,LOC107588449,LOC107706116,LOC108435714,LOC103374338,LOC103154480 other downstream 894979 10680771 ~ 10683612 (+)
G140478 nkx23,LOC106591187,LOC101065636,LOC101073339,LOC101063040,LOC104962797 other downstream 969109 10754901 ~ 10756840 (+)
G140613 NA other downstream 1423781 11209573 ~ 11212111 (+)
G140693 NA other downstream 1700399 11486191 ~ 11487884 (+)

Expression


Co-expression Network