G140223


Basic Information

Item Value
gene id G140223
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 9938856 ~ 9960116 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU176356
GGAAATACTGCCAACAGAtgatgtgtttgtttactttggGAATTCACCCACTTGTATGAAGTAAACATAAAACGTCCCGTAACTACACCATCCTGACTAGTTTTGTGTTTCCGGAGTGTGTGGACGAGCGTATTCTTGATGATAATGATGAGCCAATAATtcagaagaaatcaaaatggTTGCATGTCCACGACTGGTTTCTGCCGTCACATTGCTTCTGTTCATTGAGTCTTTATTGACAAAAGCACATGGAGATGGTTTGAACACTGCAGATGAAATAGAAGTCAAGTATGCTGCTATTGGAGCTGGAATCGGGGCatttttatctgtgtgttttgttgcaaTAAAGCTTTACATGATCAAAAAACATATGCTAGATAATGAATTATCAGAaagtgaaaacatgaaaaggccATCTTTAAGAACTATTCACATCGAGGTAAAGGACTAAAGGGTGTGCCATGGCACATCAAGAGGCAAGAGGAAATTCATAAAGGCCATCTGCAATATGAAATCAACTCTGCACTGCCTTTAAAAAGAATACTATTGTAATATACTGTTCATTTAACATTATCTGTATTATGTAgctttaattgcaaaatattaattattatttttttaagaaaaaggttttttattttcaaattagctgaaattgaaattgaaaaaactATGCGAGTAACAGTTTAACAACTACCAAACCatttctaaaacaataaaactgttcCAGCACTTTTGGGTATTTGAGCCTGATTtgacaacacacaaaaacacacacttctgaTAGCATAATACATTGTGAATTCACTTTTTGCCTCAATTATTGTCggtgttgtatttgtaattaatgtagaacaatttgcagattatatttttcactttgacattatgaacattttctgtgttgat

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0009987 cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005840 ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU176356 True 909 lncRNA 0.34 7 9938856 9960116

Neighbor

gene id symbol gene type direction distance location
AMCG00003024 drgx,LOC107548637,LOC107673892,LOC107588616,LOC107708289,LOC107668808 coding upstream 1475 9929439 ~ 9937381 (+)
AMCG00003023 LOC107552681 coding upstream 12832 9923681 ~ 9926024 (+)
AMCG00003020 NA coding upstream 18312 9901267 ~ 9920544 (+)
AMCG00003018 NA coding upstream 196017 9742438 ~ 9742839 (+)
AMCG00003007 NA coding upstream 305498 9629812 ~ 9633358 (+)
AMCG00003026 NA coding downstream 5840 9965956 ~ 9976662 (+)
AMCG00003025 NA coding downstream 36450 9996566 ~ 9997258 (+)
AMCG00003032 NA coding downstream 73808 10033924 ~ 10038457 (+)
AMCG00003033 arhgap22,LOC108443345,LOC103382122 coding downstream 86621 10046737 ~ 10048774 (+)
AMCG00003031 NA coding downstream 108005 10068121 ~ 10077255 (+)
G140192 NA non-coding upstream 150787 9787747 ~ 9788069 (+)
G140190 NA non-coding upstream 153064 9781934 ~ 9785792 (+)
G140188 NA non-coding upstream 165791 9767086 ~ 9773065 (+)
G140156 NA non-coding upstream 207993 9730648 ~ 9730863 (+)
G140002 NA non-coding upstream 792284 9146301 ~ 9146572 (+)
G140250 NA non-coding downstream 19116 9979232 ~ 9979445 (+)
G140260 NA non-coding downstream 42716 10002832 ~ 10003519 (+)
G140263 NA non-coding downstream 57862 10017978 ~ 10018198 (+)
G140264 NA non-coding downstream 58489 10018605 ~ 10018823 (+)
G140265 NA non-coding downstream 59299 10019415 ~ 10019619 (+)
AMCG00003019 NA other upstream 85403 9844776 ~ 9853453 (+)
G140189 NA other upstream 158404 9778250 ~ 9780452 (+)
G140030 NA other upstream 608392 9325488 ~ 9330464 (+)
AMCG00002998 NA other upstream 622223 9300311 ~ 9316633 (+)
AMCG00002996 NA other upstream 694757 9236740 ~ 9244099 (+)
AMCG00003066 LOC105931228,LOC105012084,LOC107588449,LOC107706116,LOC108435714,LOC103374338,LOC103154480 other downstream 720655 10680771 ~ 10683612 (+)
G140478 nkx23,LOC106591187,LOC101065636,LOC101073339,LOC101063040,LOC104962797 other downstream 794785 10754901 ~ 10756840 (+)
G140613 NA other downstream 1249457 11209573 ~ 11212111 (+)
G140693 NA other downstream 1526075 11486191 ~ 11487884 (+)
AMCG00003129 rab11fip2,LOC107585298,LOC107733785 other downstream 2411883 12371999 ~ 12678159 (+)

Expression


Co-expression Network