G140340 (ubtd1b,LOC106578996)


Basic Information

Item Value
gene id G140340
gene name ubtd1b,LOC106578996
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10247835 ~ 10251525 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU176503
GGACtcaattttccattttaattgggtttaaaaaacaaggatgaaaattaaaattggtttataaatgtacacatcacctgtaaaataaattgtacagaTATTAAATTAGCAGAAATCCTatcttataatatatattttaaaattactaaaTATACAGATTTCTATATATGTACACTCTTGGAAGTTTTTGAAAACACTTGATTTTTGCATGTTGTTTGCGGTCTATGAGccagtgtttcattttgtttccccctCAAATACAAgtcctgtgaaaataaatggctTCTTGGTTAACAGGTTCAGGAAGAAGTGGTCAGAATCCAGGCTCCTTCGGTGGTCACCGCAAAAATATTCATGGATTGACGTCCCCAGCTTTTGACTTCGAGAGTCTCCGGGACCACTCCGCATGGCTttacaacacagaaaacactgaCAGTTTATGTTGACAcactcaaaaaataataatgtaagttcattttaacaaaaataactcCCCCCTCAACCCAAGACAAAAAGACACACACGCTAAATAGCAttcttacaaattaaaaaaaaaaatgcttggaGAAGCATACAAGGAAATCACAGGTCTGCCAGAGGAACAAATTGAACTTCACAGATTTCTCAAATATTCTGCTTTGTCAGCACAGACTCCTACATACCGATTGCAAAGGAGACTATTGCTTATCGTGTGAAAGCATAGTAAAATGGACGGACGTTATATTATTGCCATCTAAAGCCTAACGGATTGATGGATGAGAACATAAAACGAATGGGATGATGTTGTACCATTTGTATAGGAAAATACTATTACTGGCAGTACCATGCAGTTCCCTCCCTATACGTGGTAAGTTACCATAGTTTAAATATtgtgctcttttgtacactaCACATCCTAATCTAAACAAGGTTTTCCATTAGTGCactaattaatgaaaaataaaatatggggGTTATTTCACTAAGTTAATTCTAGCCATTCCTGTCTATAATAGTATGGTTAACTAGGACAGTACTGATCTCTAATACCTTAAATGTTAGTCTCTAATGTACATCACTGTATGATgtctacaaagtattgagcaataaataaaaccttgcTTGAAGGTTATGATGATATAGAAGCAATACATACCCCAGACATCTTCCATGTAAAGCTACATTTAAAGTTCAACaagaacattaaatattccAAAGAAACCCATGCAGAAAAACATCACACTAATCAAGAATATCCTTACATAAAAATGACTGCACTTCTCCTGGAGTACCAGTGTCTTTGGGataggaataaaatataaatacaacactACCGTTTGCCCCCTGTGGACTAAAATGAGACTAAGTTACTATAACCTCAAAGGGCCAAGGTAAGCAAGATCTTTCTACCCCCAAGGGTAATTTGTAGTTTGGTTTCTTTaatgaaagaacattttatttaaagagttTACTTTAAGACTTAAATAGCTTGACATACGTTCTGTTCTTTAGTTTGGAATGCACaattcactcattcattcattcattgcaGGTTCAACAGACCACAAGTGATTATCAGCAGCATCTACCTCACTGATCCCCTTCTTGACCAATGATTCTGATCAGTGGACGCAGCTCAGCTACTGAACCAGGCGGAGCGATTTCAGCTGGGAAGAGGCCTACCTGGCTTCACCAAATGCCAACTCACAAGGGATCATGATGGTGGGGTGAGAAGACTACTTGTGCTTTCCTTGGTTCCCCTTTCAGATCAGTAGCTAAGTGCACCCAGGAATCGAACCAGCGAATTCCTGGATAGGCTCATTTCATACAAGACAGAACGTGGCATTTCAAGATTCTGCTCATGCGTGCTTTCCGTTTTTTCACACGGGCAGACTGTCCTTCCACAAAGAGTTTATCGAAGCCTTTTGATGCAAAGACCTTGATGAAAGATGAGGATGATTGCCCATTACCTAGTCTGCATGATAGCTTGTCTATACAACATCCTGCTTAGAAATGAGAATCTCTTAAGAGGCTGACATCTTTCCTCTGCAATCTCCAGTGTCTACAATGATCTGCAGGCTCAGAGTGCATGAAGTATGGAAAACCACTAGTGTAAAACTCAAggcataaaaataagaaaatgaggGATGCGGTTTCTTTTCAGCATTTGACATGATACAATTGTGTCTAGAAATGGTTAAAATATAGCCGTGAATTAAAAGGCAACTATGtcatatgtttttacatttattaaaattccTGAAACTTAACTGTAAAGTAGTGAGAAGGCTTTTCAGTAACACCAGCATTCcagaagtttattttcttaaaggcACACATCTACATTTCAGTGTGCAAAAAAGCTACACATTTAGGTTTCTtgtcataaaaaacaaataataatcacatttgGACAAGGAACAAGATATCATATTGCTGGGAAAGAATGGGAGACCTCcagaaactgaaatgtttccaGCTTTCTCTGCACATTCGGTCTTGCTTCTACTTTTGACCAATGTCAAATCCTCTTTGCGATCTGCTTCCACAGTTGTGTAAAGGGGCGCCAGATGTCTTGCTGCAAGGTGGTCATCCTTTCCCCCCCATCTTGCTCCTTATCATGCACAGcttttatatagatttatttccATCTCTCCAGCTTCCAGTACAACAATGGCCTggatttggttttgttctgcATTTCCACCATGCTTAAAACACAACAGACCTTCTGGACTGCAACGCACTCTGGCATATCTTTGTCCCCCTCTTTGGGACTGCCACCCAAGTTACCTCAGCAGAACAGTAAATTATTACacttataattgttttaatatatagtataagGACATACATAAGCAGTATATGGAGTCTCTccctttttaaattttattccCCTACCCCACTCCACACCCCCAgtttttgtatggttttgctCACAGGCTGCCCGAGAGCTGACTCGGTTGGGGATGCTGGTTCACAATGACCTGGATCACGAAATCCTTCTGGATCTTGGTTTCCTGCAGACGGGTCTTATCTGTGAGCAACTTCCCTGAGAAGAACCAGCGTTGGTGTGCCGGGTCAATGTCCTCCTGGACCTGGAGCTGCTTCTTCAGTTGGCCAATGGTATCTGCCATGCTGGCACTGAGCCGCAGGTCCTTGCCCGTGGAAAGACGCACTTTAAGCTGAAATTCCTTCTTGGGGACAGCCTGGGGCTCAGGATTTTCCACAGTCTCCTCCTCACTGCGCTCTGAGATCAGGTTGACTGGCGGGGCCAGGCAGTACACTGGTAACTGGTACCGATTACCCAGTTCATCATAGCACTCTGTCAGAGAACCTAAAGAATACACCACAGGAAACATGGGGCAGTGTGATGCTTGCTCCGTCCACAATTGCCTGTGCCAGCTCATGGTCATTGCATTCGATGGCAACGGCTGCTGCCTTTAATGCGTCCCAGATCTCCTTGCGTCCCTCAAATGCAGGGGCCGTGTCCCAGAATTCATCCCTCTTACTGCGCAGCTGTCCCTCTGTCATGGGGTAGTCACTCTTCCACTTGGGCTTGTCTTTCTTCAGGGGCTCATTTCGACC

Function

symbol description
ubtd1b Orthologous to human UBTD1 (ubiquitin domain containing 1).

NR:

description
PREDICTED: ubiquitin domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU176503 True 3567 lncRNA 0.41 2 10247835 10251525

Neighbor

gene id symbol gene type direction distance location
AMCG00003043 antxr1c,LOC105893913,LOC107708998,LOC107693662,LOC107720085,LOC107653967 coding upstream 21804 10195537 ~ 10226031 (+)
AMCG00003030 NA coding upstream 66193 10176642 ~ 10181642 (+)
AMCG00003036 NA coding upstream 76474 10169506 ~ 10171361 (+)
AMCG00003035 NA coding upstream 80939 10164083 ~ 10166896 (+)
AMCG00003034 NA coding upstream 118892 10098459 ~ 10128943 (+)
AMCG00003044 NA coding downstream 9815 10261340 ~ 10286055 (+)
AMCG00003045 NA coding downstream 34630 10286155 ~ 10288094 (+)
AMCG00003051 pi4k2a,LOC105896299 coding downstream 57547 10309072 ~ 10317799 (+)
AMCG00003050 NA coding downstream 74189 10325714 ~ 10326214 (+)
AMCG00003053 NA coding downstream 210751 10462276 ~ 10484842 (+)
G140331 NA non-coding upstream 10752 10234835 ~ 10237083 (+)
G140269 NA non-coding upstream 217312 10030226 ~ 10030523 (+)
G140268 NA non-coding upstream 222686 10024939 ~ 10025149 (+)
G140266 NA non-coding upstream 226378 10020824 ~ 10021457 (+)
G140265 NA non-coding upstream 228216 10019415 ~ 10019619 (+)
G140351 NA non-coding downstream 36912 10288437 ~ 10289935 (+)
G140434 NA non-coding downstream 373238 10624763 ~ 10627882 (+)
G140435 loxl4,LOC103368016 non-coding downstream 380738 10632263 ~ 10632489 (+)
G140436 NA non-coding downstream 401808 10653333 ~ 10656991 (+)
G140612 NA non-coding downstream 955981 11207506 ~ 11209502 (+)
AMCG00003019 NA other upstream 394382 9844776 ~ 9853453 (+)
G140189 NA other upstream 467383 9778250 ~ 9780452 (+)
G140030 NA other upstream 917371 9325488 ~ 9330464 (+)
AMCG00002998 NA other upstream 931202 9300311 ~ 9316633 (+)
AMCG00002996 NA other upstream 1003736 9236740 ~ 9244099 (+)
AMCG00003066 LOC105931228,LOC105012084,LOC107588449,LOC107706116,LOC108435714,LOC103374338,LOC103154480 other downstream 429246 10680771 ~ 10683612 (+)
G140478 nkx23,LOC106591187,LOC101065636,LOC101073339,LOC101063040,LOC104962797 other downstream 503376 10754901 ~ 10756840 (+)
G140613 NA other downstream 958048 11209573 ~ 11212111 (+)
G140693 NA other downstream 1234666 11486191 ~ 11487884 (+)
AMCG00003129 rab11fip2,LOC107585298,LOC107733785 other downstream 2120474 12371999 ~ 12678159 (+)

Expression


Co-expression Network