G140368


Basic Information

Item Value
gene id G140368
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10221780 ~ 10339260 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU176545
GGGCGCAGCCGGTCAGTTTGGTAGCTACAGCAGAAAAtctttgtacaaaataaaaataatggttCATCCTTcgcaagagagaaaaaaaagcaacaaggGGATGCTTCACTGAGGGAACAGGCAGCTCCCCTCATGTACAGTACCAATATATCCCTGGTCTCCCCTACAGAAGGTCTATTTCAGTGTTCCCACGGTGCCGTGTGTTAATCCAGTTCTCTGAAGATATTGTGGGTAAAAAAAAGTTCCCCTTGTTGCTAGGAGTAGAATTAGATGCATGCACATGGCTCGTTTGCCACAGGCAGCCCTGCAAACTGCCCAGGATATAGAGTATAGACAAGACATGCCGTAACCTCAGCCAGACAGCAGTTTCCTCCTCATAGGAGCTCAGGAATCAGGATCTCATGGTGCCTCGGCTAAAGGTACCGAAACTGAAATCTCTACTGCACATAACAGTGCCTTTCATGTAATGGCAATGGCAAGGCAATTTTTTGGTTTTACAACCCCAGTGTAAACCTTTGCACTTGTATTTTTACCTCCCGCTCCCACATAGACACAGGAGAACAGACTGCGGGATGTGAATCGTGTTTTTGAGCCAGCAgtaaatagtgttttattaaacagaGTCCAGATGTTGAAGTCCAGAGGCAAAACTGAGGGAAAGGGCCAACAGCCACTGGTGCCGTCCGATGAGCTTTCACTCAAAGGAGCAGCACACTGGCGGGGTCTGGAGTTATGGAGGGAACAAACAGCAGCTTATATCTCAATTTCCACCATgaagtgtttcattttgtttagtatttaaaGGGTCTACCTCAGATACAAGCAGCTGGAGAAAGGGGTCAAACACAGTTCAGCACAAATGAAGGAATTAACtaacagaaattaaacaatttgtgAATCACATAAAGTTTAAGTAGAAGAACAGCAGAAAGAGGTCTACTCTGTTCCAGGTGGTGTGTCCTGACTGTTTTTTAATGCTTGGCCTCTGGATTTTCTATGGCTTTAAACACTGCAGAGTTTCTATTCTTACAAGATCAAAACTTCAGACTGGCTCAATAGCCCACCTGCAAAGCACAGTACAGCATTTAGCAAAGCTACCAactaagaaacaaagaaaaaaaaacattatagaGTCTAAGGTGTACCGTACTTCAAAGCATATATTCATTTGTGCATGTTTAGCTGTAGACCATGAACTCGCAGTCTACAGTGCATTAAGAGgcttttaatatgaattatcTAAAACAACGAGAGATGGATTAAACCCTCCTAAATTAAAtggatcaaatactttaaatttaaaaacaaattcattcTGAAGGACTACTTACAAGGGAGGCCTTAATGTTGCTTATTTGGTTTTAtaacattcaattaatattGTTATCGTTCTGATAAGCTTGTCAACCAGTAACCAACGCACCTTCCCAGCCCAGCGGCATTTAGTCTTGGGAGAATGAAAACGCCACAGTGTTCAACACCAACTCAGAGGCAGCGCAGTGAAAATCTCAAGCAACTGCTGAAGACATGCGATTTGCCATTTTGCCTTGTTTTCCCAGGATTGGAGTAGTAAACGCTCATCTTAAGTGCCACTAACCAGAGGTAATGATTGagggggtaaaaaaaatataacaacGATAAATATAGCATGACGATTCGCAACGGTACCTGTACTAAATAAGCACAGGAAGCTCTAGCTCATGTGTAATGTAGTGCCATCCAGCTCACAGACGCAGCCGACCTGTGCCTGTGTGCAGCCAGAGGGGAGAGGCATGACAAGCTtgggaaaaatacataaagatattaataaaaataaacaagaggaATCGGGTCCCCATACTACTGAAGCAGCGACTCTGTGGATACGAATGTCCATTCCTCTCTTCGGGCTTTCCGGATTTCGTAAACTCAAGCCACAAAGCCCAGGAGTGATTTTAAGTGCTGCAAGTCCTCCAGAttgacttctttttttttttttttatttttttttttttttttttttttttttttttttttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU176545 True 2021 lncRNA 0.41 4 10221780 10339260

Neighbor

gene id symbol gene type direction distance location
AMCG00003039 NA coding downstream 31155 10185606 ~ 10190625 (-)
AMCG00003037 NA coding downstream 87770 10128332 ~ 10134010 (-)
AMCG00003041 LOC108443371,LOC108437314 coding downstream 130044 10079855 ~ 10091736 (-)
AMCG00003027 NA coding downstream 189346 9981210 ~ 10032434 (-)
AMCG00003028 NA coding downstream 275840 9942056 ~ 9945940 (-)
AMCG00003052 zgc:171482,zmat4,LOC107747266,LOC107564682,LOC108443470,LOC107702738,LOC108262817,LOC107728442,LOC107665614 coding upstream 80928 10420188 ~ 10445204 (-)
AMCG00003056 LOC107702728,LOC107665568,LOC107747303,LOC107564685,LOC107728441,LOC107601040 coding upstream 158942 10498202 ~ 10511429 (-)
AMCG00003054 sfrp5,LOC107747303,LOC107564685,LOC107665568,LOC107728441,LOC107601040 coding upstream 178607 10517867 ~ 10519484 (-)
AMCG00003055 NA coding upstream 223993 10563253 ~ 10570538 (-)
AMCG00003063 NA coding upstream 235372 10574632 ~ 10578103 (-)
G140279 NA non-coding downstream 183923 10036178 ~ 10037857 (-)
G140228 NA non-coding downstream 332154 9889158 ~ 9889626 (-)
G140217 NA non-coding downstream 368367 9848895 ~ 9853413 (-)
G140199 NA non-coding downstream 450273 9765653 ~ 9771507 (-)
G140174 NA non-coding downstream 480840 9740654 ~ 9740940 (-)
G140456 NA non-coding upstream 283346 10622606 ~ 10623742 (-)
G140458 NA non-coding upstream 314065 10653325 ~ 10656997 (-)
G140521 NA non-coding upstream 479509 10818769 ~ 10819159 (-)
G140537 NA non-coding upstream 586858 10926118 ~ 10929972 (-)
G140546 NA non-coding upstream 626272 10965532 ~ 10967602 (-)
AMCG00003017 NA other downstream 614464 9596943 ~ 9607316 (-)
G140015 NA other downstream 984050 9236658 ~ 9237730 (-)
G140006 NA other downstream 1373940 8847032 ~ 8847840 (-)
G139933 LOC108443181 other downstream 1727184 8485361 ~ 8494596 (-)
AMCG00002970 cj104,anapc16 other downstream 2283539 7931166 ~ 7938241 (-)
AMCG00003110 LOC107699307,LOC108442385,LOC108263686,LOC107727357,LOC105890865,LOC104955882 other upstream 1269203 11608463 ~ 11622649 (-)
G140758 NA other upstream 1301556 11640816 ~ 11647619 (-)
G140757 NA other upstream 1354746 11694006 ~ 11733762 (-)
AMCG00003138 NA other upstream 2388978 12728238 ~ 12739807 (-)
AMCG00003144 NA other upstream 2511761 12851021 ~ 12855341 (-)

Expression


Co-expression Network