G140434


Basic Information

Item Value
gene id G140434
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10624763 ~ 10627882 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU176623
TAGACACTTCCGGTTACATGAATCAGTAGAAATAACTGGTGATGTTACAGAAGTAATAGTTTTGCAAGATtcagtataaatacaaatagttgTAGAATGTGAcgggtatttttgtttttgcttactTTGTAAAGAGGGTTGATATTTCACAGGCAgtcttcttttttaatattttcatttcaatgatGTGTACAATTTGCAGAGCTCCAGGAATCGATGGCTAACtttttttgtgctgctttgttttagtactacagattttattttgtttcagtaatactgaatttatttaattcagggAGGATACcatagatgaaaacaaaaatcacaaagtGTATTTAAgtagatttttaattttcactgtAATAGAAAGTGACACGGAAATGGACTTCTGTTAACACAATTTATTAAATAACAGCATGTTCTGATTTTGTATGGGGCTACAATACAAATGCAGGTTATGGATCTTTTGAGAATTTGCAGCATTATTGATTGGACAAGCTACTCGATTTCAATTTAATCAAGTTATAATatgcttatttttctttttctttatttcggGGAAAGTCTGGCAAGAATGTGATTACAGTCTTCAATGTAGCGGGAAGGCTACACAATCACAGCTTTCCCTGTCTGAACTATTTTTCACTTCACTGAAAGACATGAAAGATAGACCAAGCCATAGTAATTTCCATTCTCAGTCAATGGCCAATTTAATCCACAGCCCTTGGCTACACATTACATGTTCTttctatcattatttttaagtacagGTGTCATTATGgtattaaaaatgaactttTCCATTTAGTTGATGTGAGACAGCTAaacaaagttttcttttttaatgaccATTCACGCACAGTACATGTAAATATaactggaggggaaaaaagtaaaacggGAAGATTTATAAATTAccaagataatacattttttattttaggtgaAATATGTTCTTTTTGAAACAGAAAATCCCAGTTTGTGGTATCCCTACTGTCCACATCTAAACTCCAGATTGGTATACAATGCGATGTTTGTGGGACATTAGTTGTTGTGTTGATGTTTGCAGGCTCACATACAAAACCTGTGCCTGCTGAATAACCACCATGGCCAGATGTGCAGCCTGTTTAAACGTGATAAAAGGGATTTTATTTGGTTTCCATGTTGCTGTGAAATTGGGCTTTTTACAGCATGTCTGTGCAATTTTAATagacatgtatttaatattttagcaTGATTGTTTAAACAGGGATTTCATTTCACTGcccaacaaaaacacataagcATGAGGTCTGATTGCACTGCCTCATTTGTCTGACAGGCCCTTGGTGCATTTCCGCAACAACTTTTAAATCTACTGAAAAGTGCTGATGTTTAGCTTCTTTTTCAGATCTATAAAAGAAAACCTAACTGCTCACTGTTGAGATGGTTGCCTGAGTGTTTCCAGTTGGGATACCTCAACCCATAGCAAAGAGAACAAGGGTAATTCGCAGCTGTAATGTACACATTGCTGTTGGTTAAGAAATAATACTGCTGGCACACTGACAGTTATGATTGACTGCATACCAAAACCTTTACTTACAGAGTTGGAATGAACATCTAGAGAGACTGTAACTTCTCCCTGATCTGACCTTGTTTAACAGATTTGACCTTTCAAGCTTGGTCCGCAGTGCCTAATAGGTCACAAACTGAACAATAAAAAACCTGCATGTAGCATATTGAATAcgaaaaaataatttatatatttctaaaagaaTAATATTCACTTGCCCAGTTTTGAAAAATCAAAGTTTATTTCTCTACCAATCTGAACTTAATTTTAGACATAACTCTTACAAACAGAACTGCCTGAATACTGAAATTTTATGAATAAAGTGCATCATTTACTGAAAGCATTTGACCTGTTCCAGCAAAAATTCCAACAGAGCGAGAGACAAGATTATCGGTTTGAACAGAAATAATCGGCAGTTCTAttggtaattgtttttgtaaatacttaaaactGTACATGAGGATACATGTGCAACATtgaaaaaaactttaaacataaaaatattatattgtttttatacaaaacaaactttgtttttcaaaaagggATGTGAATTTGGAGAAACAGTACTCTTACACATGAAGCACCAACATCCAGATCAGAGAATCAGGACACGAAATCCCGGCTGAACTCGACTCCGAGCACAAAGCAGCAACTTTCACCCCAAGCTACCCTCCCTGACGGCCGAGCAGGAGTGGGGTTGGCACTGCAGGGATCCGATCCGTTCCTTCCAGGTTTCCAATAGTGGGGATCGATGCcggtaatttttttattttacaagtttATCATTGTCTTCCTGATTACAGAGTAAGAAATTGATCTGGTATTAGCATATTTTATGGTAAGTCCATTCTTCAGTGTGAGATCTTTTATGTATATTACAAAAACTGAATTAGAAAATCTTAAGACCATAGAACCCAAGTGTGAATTAATTTGGAAGCAATACTAAGGTTTACAAAAACTGCTGTCAGTTTGACACCTGTCCACGTCGGTGTGAAGAATAGAATGGACATTAGAGAAGACCTTTCCAGAAGTGTTCTTTACTGCACTGTTAAAGGTGTTATTCCTGGCATTTCTGGAGTGGACAGATGCCATTCTGCGACCCGTTGATGTTGAATGCACTGAGGTAAGTGCTCTTATGACCCAGTCGTGACCCTGCCACTGAGGACTAGCAGAGCGTTACCGTGATGATGGGTTAGATGAAGTTGCTGGAGATCTGGCGCGTGTGCTCAAACAGGTCCTCAATCTCCGAGCTGTAGGCGTCTCCTAGGGGCAACAATAGGAAGAGCTTCATTCGCACGTTTCTCATGCtttcagggtgtgtgtgtttctacaCGAGCGCATGCTGCACTGAGGTTTACTTTGTGTGCGACACAAGCCCGGCTGGACGTAAGCACGGTGTAGCAGAGAGCGCAGGGCAGTACCTGTGTGACAGCCATACATCCAGATACGGTTTCCGTCGTATTTGCATCGGCAGCGCATCACGTTGTTGGTGAAATCAGATTCGGCCATATCCAGGCTAGGGTTCACTTCCACCTGCGGGAACAGCATATTGCTCATATGGG

Function

GO:

id name namespace
GO:0030162 regulation of proteolysis biological_process
GO:0052547 regulation of peptidase activity biological_process
GO:0051336 regulation of hydrolase activity biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU176623 True 3120 lncRNA 0.38 1 10624763 10627882

Neighbor

gene id symbol gene type direction distance location
AMCG00003057 NA coding upstream 2615 10612506 ~ 10622148 (+)
AMCG00003058 LOC108443489,LOC103368019,LOC108258460 coding upstream 59145 10543469 ~ 10565618 (+)
AMCG00003053 NA coding upstream 139921 10462276 ~ 10484842 (+)
AMCG00003050 NA coding upstream 298549 10325714 ~ 10326214 (+)
AMCG00003051 pi4k2a,LOC105896299 coding upstream 306964 10309072 ~ 10317799 (+)
AMCG00003065 NA coding downstream 58388 10686270 ~ 10693974 (+)
AMCG00003064 slc25a28,LOC107601050 coding downstream 77751 10705633 ~ 10719938 (+)
AMCG00003070 got1,LOC105006879,LOC107601049,LOC107665595 coding downstream 153119 10781001 ~ 10787555 (+)
AMCG00003075 hpse2,LOC107747298,LOC107665577 coding downstream 191022 10818904 ~ 10824933 (+)
AMCG00003076 hpse2,LOC107747298,LOC107665577,LOC107702736,LOC107586094 coding downstream 232816 10860698 ~ 10862116 (+)
G140351 NA non-coding upstream 334828 10288437 ~ 10289935 (+)
G140340 ubtd1b,LOC106578996 non-coding upstream 373238 10247835 ~ 10251525 (+)
G140331 NA non-coding upstream 387680 10234835 ~ 10237083 (+)
G140269 NA non-coding upstream 594240 10030226 ~ 10030523 (+)
G140268 NA non-coding upstream 599614 10024939 ~ 10025149 (+)
G140435 loxl4,LOC103368016 non-coding downstream 4381 10632263 ~ 10632489 (+)
G140436 NA non-coding downstream 25451 10653333 ~ 10656991 (+)
G140612 NA non-coding downstream 579624 11207506 ~ 11209502 (+)
G140632 eif4e1c,LOC108444323,LOC103032634,LOC107708453,LOC107690176 non-coding downstream 617374 11245256 ~ 11247278 (+)
G140692 NA non-coding downstream 852923 11480805 ~ 11481037 (+)
AMCG00003019 NA other upstream 771310 9844776 ~ 9853453 (+)
G140189 NA other upstream 844311 9778250 ~ 9780452 (+)
G140030 NA other upstream 1294299 9325488 ~ 9330464 (+)
AMCG00002998 NA other upstream 1308130 9300311 ~ 9316633 (+)
AMCG00002996 NA other upstream 1380664 9236740 ~ 9244099 (+)
AMCG00003066 LOC105931228,LOC105012084,LOC107588449,LOC107706116,LOC108435714,LOC103374338,LOC103154480 other downstream 52889 10680771 ~ 10683612 (+)
G140478 nkx23,LOC106591187,LOC101065636,LOC101073339,LOC101063040,LOC104962797 other downstream 127019 10754901 ~ 10756840 (+)
G140613 NA other downstream 581691 11209573 ~ 11212111 (+)
G140693 NA other downstream 858309 11486191 ~ 11487884 (+)
AMCG00003129 rab11fip2,LOC107585298,LOC107733785 other downstream 1744117 12371999 ~ 12678159 (+)

Expression


Co-expression Network