G140458


Basic Information

Item Value
gene id G140458
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10653325 ~ 10656997 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU176659
TGAGCTCTAGATTAAGGTGTCCCCTTAATTCAGTGCAGAATAGAAGAGTCCTTAATCTAATGGCggaaatattcaatatttctcCTAGATAGGGCACAAGTCTCAGCCTGTAATCTTGTCGATATCTGGCACACAGTATTCTGGAAGGAAGGGGACACTTGCAAATGACAGCTCTGGCTCCCGTCTTCTGCAACAAGACTGCAGACTGCTGGGCGGATTGTATGTATGGTATCCACTTGCCTTGGTCGGGATGGGATTGTGGCTGGGATGCTCGATTGGTATTATTCCAGTCCCTCCCTTCTCAgtgccaaaacaaaaccacacgaACAATAATACAGTTGAGCTAGATTGTGCTATACCTTGAATCTCACACTATAAGtgccttttattaatttataacacAGCCTAAAGGATGAGACTGGTAATCTAGGCTTCTGTGAAATCCTTCCTGTAGGTGGATGTTCATTTGAAATCCTTGTCAGTCTTCGGTACCACGGCTGTGTCTTTGTTTACAGAAGgtgtcaatgtgttttttaaactttaacttAACTTCGAAGAACCAGTTTGTACTCCAGCTCTTTCCCTTTACCTCTAGTAGTGATTTTAATGAACCTGGGCTTGACTTCTGGTACTGCGGCCACTAGTTGCAATAATTTTTTGACccctttgttttgttaatttttgaTCCCCTTTTCTCAGTCCAGAGCTGGGCAGTGACGGCCTCATAAAAGCTGTCTAACGCTACACCGAATTAGACGTCTCTTGCCTGGGTTCTCGACCCTGGATGGGAATTCTTTGATTTTAGTGCATGTCCTgctatttcccttttttaatatgagattgcatttatttaagtctTTATAAAGTGCCTTCTGTGAATCATAGTCTGACTGTCTAGAAAATCGATTGTCTAGGTAGATCTGAGGAAAATCACGTAATCCAAACCCCCATAGGTAACGGACATCAAATTTCATGTCCGTGGGATTCCTATATTTGTGCCTGGTTTGGATTTGATCATTAAATCTACAGCATTCTGAATAATTAGATTATATAGTAAAGTATGATGTGAATTAGTTGGaggaaaatgtgaaagaaaatagtATTATGTATATTGTCATGTCATGATCATACCAAATGATGTACTGTCTTACTTTGATAGTGAACAGGGTCCAATGCAGTAGCTTTCTCTTGTTTTATGATGCATATGGGCACTTTTGATCAGGCACTAGGCAGTTGTAGTCTCTGTTATGGAAAATGACTTCTGGAATGACGTTCCTGTTGAGGGGAGAGGTTTCTCCTGTTGTGGCCAATCTTAATAGCCGTTGTTGCTGTAGTTCTTGCTTTGTACCACAAGATCTCCACGTTAACTTCTGTGTAATTCCCTCAAGCAAAGAGGTTTATGCGGATAATAAATTGAGGGCAACCAAAGTATGTGGGAAATGTGGCCTTAAAGTAGTAGCTACAAATCAAAACTTGGCCCTACCCATGAATTGCAAAGTAGAAATCTGTACCCAATcgcggtttaatttattgttagccgctttatactatttataaatcaaaatgcgatggggtacaactttgtaatttgcgattcaCCAGTGGggtaatgttttgatttggtctaaaagccactgtttttatttttttaaataggaatCCATTTTTGTGCTTCTGcagtttcaattaaaacaacttCTGTTCATATGAACCGTACAGCCTATTATTTTCTCATAACAGCATTTAACGATAGCTGCATATGTTTTAGTAGCACGGTTCAAGTAAAAAACATGTCCCAATGCATAGAAAACAGAATTATCtttctgcttttaatattttaacttttggTCTCGCTGTGGGAAGACCGCAGTAGTAGGTGTCCTCTGACAGTCTTTCCTCGTCCTCTTGGCACAGCACAGATCACCAGGGACATTAGTCTCCATTACAGAGTGGCAGGTAGAAGCACCGTGTCGAACAGGACctgctaatttaatttactgcCCAGCTGGTTGAAGGGTATTATTGAATGAGTGAGTGATTTACGTTGCGCTGGGTTTACGGTGAAACGTTCTGATTTTACTGAATGCTATGCTCTCAAGTATGAACCaacattgtgcattgttttattaatttattttactgatgcTTAATGTTGAAGCCCATCAGTGGACTAAATAACCAAAAGAGGAGAACCGTACAGGACTACAACAACTCTAATTGTTTTATACTCCAGCAGCCCTAACCAAATGCTTCAAGCCTAGCTCAAGCTTCTTAATAATGATTACTGATTAGTGTTATGGCTGTATTGATATTATAGTATCATCTCTCTGCTGAATACTGTGCACAAAATAATCCACTTTTTCTGTTAATGAGTCCCAAAGGGAAGGAATGACACTTTAAAGGGTAAGGGGGTCGCACACAGTGTTTAAAATCTTTTGCACATGTTCACTGCTCCACGCTGGAGTCAAAAACCTATATCATAAagtgtttagttatttattgaatatttatttagttcgtCAGGTAGTCTAGAGAAATGCTGGCCGGGGCACACTGTCCTGCACTCTTCTAACGATGTGTTTTTGAGTAGTTACTTGTCTTCACACTGGGCTCATTTTAGGAGTTAATGGCCCATACTTAGGGTCTCCTcccccaattaaataaaaactgcatgaAGCCGTTCTGCACAAAATTctggaaaatgtgttatttaggTCTGGGTTAATTGGCTGGTGACACTAAAGTGGATGATACTAGCATAGCACTCACTGCTGATCACAAGCAAGGGCCTTCATAATAGAGAAGGAAGTTCCTCCCAACTGCTGTGTGTTCTAGATCTCAAACGTTATTGCTGAGTGCAGATAGATAGATTATGAAGTGTGCTTTATATGTAAAACAAGGATCACTGAATTGTACTACTTGGTGTTCATTTACACAGAAGAGAATCGCCTCAGTGTGAAGTTACGGGATGTATAAAAGTTGAAGAGAGCAGGGCAGACGAGCCCCCCCCAGCCCAGCAGTCCTCTCCTGAGACAGAGTGTCAGAGAGCAGTTTGTTCACAGTCATTCGGGAAGGTTAAATAGTGGTTCTTGTCGTTTCTGAACTGGATGTTACGAAGTTCTGTGTTCAAATCTCATCTGACCTCACTGCTCTGTAAAGATGGAGGTTTAGGGACCAATGCGAAGAGACCAGCAGGGTGATCACCTGACTTCCTGTTGTTGCGTCAGGACCTTATTCTGGACTGCTTTAGGAGTTGTCAGGTGGGGGGgattccatttgtttttgtttttaatgctttccAAATAACtgttacacttttaaatatCATTCTTAATGTGCCTACCATGCATATGATTCAGAGCATGTTTGTTGTCCCTATCACCCCCACATTTTAATAGAGAACTTGCCATCACTACCCATGTTTTTTATCAGGACACAAGTTGACCTTTTATACTTTGATTTTTGTTCCCAgaggtttctgttttattatttatgatctTCTAAAGTGTATGTAAGGACCAACTGCCAATTAGAAACGAAACGTGTTAATCAAAGCTCTGTAATCCTCCTTGATGATCCCATGGTGTTTCTGAATTatgtatgcattgtgttgcactGCTGCCAAAGAGTACAGTCAATAGTgcattaaatttattttaatcttttcaccttg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU176659 True 3673 lncRNA 0.40 1 10653325 10656997

Neighbor

gene id symbol gene type direction distance location
AMCG00003059 NA coding downstream 5415 10624960 ~ 10647910 (-)
AMCG00003060 crtac1,LOC107832886,LOC106964415 coding downstream 52674 10581393 ~ 10600651 (-)
AMCG00003063 NA coding downstream 75222 10574632 ~ 10578103 (-)
AMCG00003055 NA coding downstream 82787 10563253 ~ 10570538 (-)
AMCG00003054 sfrp5,LOC107747303,LOC107564685,LOC107665568,LOC107728441,LOC107601040 coding downstream 133841 10517867 ~ 10519484 (-)
AMCG00003062 NA coding upstream 64 10657061 ~ 10662103 (-)
AMCG00003061 NA coding upstream 13508 10670505 ~ 10679832 (-)
AMCG00003067 NA coding upstream 37595 10694592 ~ 10700613 (-)
AMCG00003068 NA coding upstream 73945 10730942 ~ 10743690 (-)
AMCG00003069 nkx23,LOC106591187 coding upstream 99144 10756141 ~ 10758646 (-)
G140456 NA non-coding downstream 29583 10622606 ~ 10623742 (-)
G140368 NA non-coding downstream 314065 10221780 ~ 10339260 (-)
G140279 NA non-coding downstream 615468 10036178 ~ 10037857 (-)
G140228 NA non-coding downstream 763699 9889158 ~ 9889626 (-)
G140217 NA non-coding downstream 799912 9848895 ~ 9853413 (-)
G140521 NA non-coding upstream 161772 10818769 ~ 10819159 (-)
G140537 NA non-coding upstream 269121 10926118 ~ 10929972 (-)
G140546 NA non-coding upstream 308535 10965532 ~ 10967602 (-)
G140567 NA non-coding upstream 354141 11011138 ~ 11037311 (-)
G140588 NA non-coding upstream 450399 11107396 ~ 11107604 (-)
AMCG00003049 NA other downstream 321953 10301800 ~ 10331372 (-)
AMCG00003017 NA other downstream 1046009 9596943 ~ 9607316 (-)
G140015 NA other downstream 1415595 9236658 ~ 9237730 (-)
G140006 NA other downstream 1805485 8847032 ~ 8847840 (-)
G139933 LOC108443181 other downstream 2158729 8485361 ~ 8494596 (-)
AMCG00003110 LOC107699307,LOC108442385,LOC108263686,LOC107727357,LOC105890865,LOC104955882 other upstream 951466 11608463 ~ 11622649 (-)
G140758 NA other upstream 983819 11640816 ~ 11647619 (-)
G140757 NA other upstream 1037009 11694006 ~ 11733762 (-)
AMCG00003138 NA other upstream 2071241 12728238 ~ 12739807 (-)
AMCG00003144 NA other upstream 2194024 12851021 ~ 12855341 (-)

Expression


Co-expression Network