G140537


Basic Information

Item Value
gene id G140537
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10926118 ~ 10929972 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU176757
TACCTTTGGCGGTCTTCCTCTCCTGCGTTCTTCCTGGGATGACTGGAGTTTCTCAATGAGAGGGAGGGCAAACGATAAGGTTTTTCCCGTGCCGGTCCTGGCCTGCCCAACCACATCTTTTCCATCATATATAGAGTTGAAGGTTTTCACTTGGATGTCAAACAAGTATGTCACTCCTTTCTTCAAGCAGTTTAATGGTCTCTTTGGAGATTCGGAAATTAGAGAAGGCGCCTTCTTTTTGCTCTGGAGTCAATTCCACTTCTTTGTCACTGTCGCTGTCCAGTTCTTCACTGGAATGAGATGGCATGTCCACTGGTGGTTTTCCATTAACTGAGGAGATGGCGGGCAGCTTTGACGTTTCTGGTTCCGAGTTTCCATTGGCATTTGGCTGGACTtgctccttctccttcttctttttcttcttcttcgtCTTGGGCTCGGTTTCCTGGTCCGAGGTGTTGGATTCTTCACTGGAATGAGATGGTGTGGTCGCTTTGGGGGTCCCATTGACCTGCTTGGacttccttttctttccagAGTCTCCATTCAGGGtgtcctctttctttttctttttgggagTTGGTGGACTGAACTCATCGGGTTGCTCTTCAATAATtgccttgtttttcttgttttttccctctttggatttttctttcttctgtttCTTGAGTAACTTCCTCTCCTCCTTGCTTATTTCCACCTCGTTTTCCATCTCGATATCTTCAGTTACTTCGAGAAGTTTTCCTGGCATTTTCCCCGATAAGTTCTTCCCAAAGACGGAGATGACTCTCCGTCTCggacacaaaattaaaaaggaaggaGCGTCGCCACTCACTGCCTGCACATCCGCTAGAACGACGGAAAGTCAGATGAGTCAAAAAGCGCGCCGTTTATGTGCAAAACCGTGAAATACCCAGTCGTTGCATAGCGCATTGTTCAAAAGTCAgtttttcaaaagtcaaattgaAGCACTTTCAAGGTGCATTGTCAAAACTTTTCCAGCACCTCGTAGCTTTGGTAAACTAAACTTTCTCatctaaaataaacacttttctgcactgaactaagcacttaaaattgtaatttaaccACACTAGATTAGATGTTATTGTGCTGTAACACCCAACACAgtcaaaataagtaaatccCAGTACACAGTTACTTCAGTTTCAATGAAAGCCTTAGTGacttgttttaaacatgcacacattaaaaaaatgtactccCACGTACATTCAACGTGcaaatgtaaagaaatgcaTAACGTTTTAATCTCTTTACTGTTAATCCATGTATATTCAATATGCTCACTTGTTACTGTCAAAACATCATGTTTATTctaatcaaaacaacaaagtgtaAGTTCCTATAACCTTAGCCTAATATAAAGTCTTTAAGTTATGGAATCTCCCTCAGCTATCAATACGtttgcattagtatctgctggTCTTTGCAATTTTTTAAGTAATTAGACATTATAATAAtagaatatgaatacaaaaccATCAACATGTCCACATACTAGCAAATAATtgagtgaaaaataaagatgtaattTCCACCATTCAAGGACTTCTCAAATTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU176757 True 1588 lncRNA 0.40 5 10926118 10929972

Neighbor

gene id symbol gene type direction distance location
AMCG00003078 NA coding downstream 2540 10919149 ~ 10923578 (-)
AMCG00003080 NA coding downstream 13537 10907992 ~ 10912581 (-)
AMCG00003071 LOC106591176,LOC103370034,LOC106591308,LOC103383202 coding downstream 118385 10794054 ~ 10807733 (-)
AMCG00003069 nkx23,LOC106591187 coding downstream 167472 10756141 ~ 10758646 (-)
AMCG00003068 NA coding downstream 182428 10730942 ~ 10743690 (-)
AMCG00003081 NA coding upstream 15047 10945019 ~ 10951437 (-)
AMCG00003079 NA coding upstream 24616 10954588 ~ 10956401 (-)
AMCG00003089 tacr2,LOC107666460 coding upstream 110365 11040337 ~ 11047762 (-)
AMCG00003106 hnrnph3,LOC108438202 coding upstream 208225 11138197 ~ 11166902 (-)
AMCG00003097 NA coding upstream 240568 11170540 ~ 11175031 (-)
G140521 NA non-coding downstream 106959 10818769 ~ 10819159 (-)
G140458 NA non-coding downstream 269121 10653325 ~ 10656997 (-)
G140456 NA non-coding downstream 302376 10622606 ~ 10623742 (-)
G140368 NA non-coding downstream 586858 10221780 ~ 10339260 (-)
G140279 NA non-coding downstream 888261 10036178 ~ 10037857 (-)
G140546 NA non-coding upstream 35560 10965532 ~ 10967602 (-)
G140567 NA non-coding upstream 81166 11011138 ~ 11037311 (-)
G140588 NA non-coding upstream 177424 11107396 ~ 11107604 (-)
G140648 NA non-coding upstream 303696 11233668 ~ 11308389 (-)
G140704 NA non-coding upstream 402457 11332429 ~ 11333684 (-)
AMCG00003049 NA other downstream 594746 10301800 ~ 10331372 (-)
AMCG00003017 NA other downstream 1318802 9596943 ~ 9607316 (-)
G140015 NA other downstream 1688388 9236658 ~ 9237730 (-)
G140006 NA other downstream 2078278 8847032 ~ 8847840 (-)
G139933 LOC108443181 other downstream 2431522 8485361 ~ 8494596 (-)
AMCG00003110 LOC107699307,LOC108442385,LOC108263686,LOC107727357,LOC105890865,LOC104955882 other upstream 678491 11608463 ~ 11622649 (-)
G140758 NA other upstream 710844 11640816 ~ 11647619 (-)
G140757 NA other upstream 764034 11694006 ~ 11733762 (-)
AMCG00003138 NA other upstream 1798266 12728238 ~ 12739807 (-)
AMCG00003144 NA other upstream 1921049 12851021 ~ 12855341 (-)

Expression


Co-expression Network