G140546


Basic Information

Item Value
gene id G140546
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10965532 ~ 10967602 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU176774
TCCAGCTCTTAAAATGTGATGCCACCTAGTGACCAAATTCTgtcatgatttaatttattatacactattctcaaacaaatgtaatgtcttCCATTATACATTGTGAAAATTGTCATTAACTCTAAATATTCTCAgtattttattaagaaataatacaCATCACAGTCGTAAACATCTCACCCAAGTTAtagtttttattgatatttaattatttttttaaatgaacactaTATTAATAGTAAGCATTCAGAAGAgcataaataaacagcagatAAAGGCAGGTAAGGACAACCATTGGCAGAAGCACATTCAAGGTATATTTACTGTGGAATACTATCAGAAACCCATGGAGTCACaaatcattttactttaaaatataggcctaatttaccatttgtaaacaaaacatacatttttaaaatcagcaaataaattaaacaaggcTAGACAAGAGCCCTCCAATTAAGTTATATTTCATTGTATAAATCCATTTGTGCCAGTGACAACCAAATCTGCTGCTAGTTTCCTTCAGCATTCAAAGGACTACAACAATATTTTAAGTTAGTGTTACAGGGGGGGGAAATGTACATGACAGAAGGTATAGAAGgctttttattcatgtattaatttttcattGTTCAGAAGTCGGTCAATCAGTTCGAGgaaaccattttcattttcaggcgCTCGATTTTGAGAGGGAGGAGGCCGGACATCTCTTCGCTAAGCTCCAGCTCCGTCTCCACCGCCTTCTTGGCCTCGGGGTTGCGCTCGCAATACTCCACCACAAAGCAGTAGCACTCCAGGGACTTGTTGAGGTTCTCCAGCTGCTTGCCGGAGTCGGGGGAGATGATCCTGCTGTATAGACGGGCGATGCGGAACTTGGCAACGAGCGCCGGACGCAAAACATCATCTTCCAGCTTGTCTGGGAACTTGCCATCCGGCGTCTTGACGGAGTCCAGGAACATCTTGTAGTACTTGATGGAGGACATGCAGAGGTGGTTGAACTTCTTGATGGTGTGCGCGTCCAGTTCGTCCTGCTTGTTGGCCACCACCAGCTTCAGATCCATCATCTCGTAATAGGTCTCGGCCAGCTCGAACTGAAGCTGCCGGCAGATGAGGAGGTAGTACTGCGCGTTGAGGTCTAGGCAGATGGGCTCCAGCATGTCGATGCGGCGCTTGTGCATCTTGCAGCGCCTCTCGCAGTCCTCCTCGAAGAACGACAGGGCCTTGAACAGGGCGCTGTGGTCTTGGAGCACCTCGATGTGATCCGTGACGTGGCCGTCCATCTCAAAGTATTCCTTGGCCTCGTTGACGTAGTTCTGCCCCACCAAGAAGATGGCTCGGGCTTCCTCAAAATCTAGAGGGTAGATGCAGCTCACCTTCTCTTCCAGCGCCAAAATCGAATCATATGTGTCGCTGGAACCAAATAGAATGGCACTCTTCAAgcctttctccttctcctcctcctgttcCCTCCGTCGTGCTTTCTGCTCCACCTGCCGTTCCACGTCCAGCTCACCGATGTTGTCCTGCATGAAGTCCTCTAGAAGTTTTTTGGCATCTTGCAGAAGATTCAGGCAATATTTGATCCAGCACCTGGCGATTTCTGCTCTCTTCTGACGGAGCTGCTCACGCTTCTCGCTTTCCGTCTCACCTTCAtcagaaacaacacacacctTTATTGAGCAAGTGCACAacc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU176774 True 1702 lncRNA 0.45 2 10965532 10967602

Neighbor

gene id symbol gene type direction distance location
AMCG00003079 NA coding downstream 9131 10954588 ~ 10956401 (-)
AMCG00003081 NA coding downstream 14095 10945019 ~ 10951437 (-)
AMCG00003078 NA coding downstream 41954 10919149 ~ 10923578 (-)
AMCG00003080 NA coding downstream 52951 10907992 ~ 10912581 (-)
AMCG00003071 LOC106591176,LOC103370034,LOC106591308,LOC103383202 coding downstream 157799 10794054 ~ 10807733 (-)
AMCG00003089 tacr2,LOC107666460 coding upstream 72735 11040337 ~ 11047762 (-)
AMCG00003106 hnrnph3,LOC108438202 coding upstream 170595 11138197 ~ 11166902 (-)
AMCG00003097 NA coding upstream 202938 11170540 ~ 11175031 (-)
AMCG00003104 ccar1,LOC107708455,LOC107747452,LOC107582549 coding upstream 239871 11207473 ~ 11224433 (-)
AMCG00003099 LOC107089835 coding upstream 257633 11225235 ~ 11230377 (-)
G140537 NA non-coding downstream 35560 10926118 ~ 10929972 (-)
G140521 NA non-coding downstream 146373 10818769 ~ 10819159 (-)
G140458 NA non-coding downstream 308535 10653325 ~ 10656997 (-)
G140456 NA non-coding downstream 341790 10622606 ~ 10623742 (-)
G140368 NA non-coding downstream 626272 10221780 ~ 10339260 (-)
G140567 NA non-coding upstream 43536 11011138 ~ 11037311 (-)
G140588 NA non-coding upstream 139794 11107396 ~ 11107604 (-)
G140648 NA non-coding upstream 266066 11233668 ~ 11308389 (-)
G140704 NA non-coding upstream 364827 11332429 ~ 11333684 (-)
G140742 NA non-coding upstream 630456 11598058 ~ 11599956 (-)
AMCG00003049 NA other downstream 634160 10301800 ~ 10331372 (-)
AMCG00003017 NA other downstream 1358216 9596943 ~ 9607316 (-)
G140015 NA other downstream 1727802 9236658 ~ 9237730 (-)
G140006 NA other downstream 2117692 8847032 ~ 8847840 (-)
G139933 LOC108443181 other downstream 2470936 8485361 ~ 8494596 (-)
AMCG00003110 LOC107699307,LOC108442385,LOC108263686,LOC107727357,LOC105890865,LOC104955882 other upstream 640861 11608463 ~ 11622649 (-)
G140758 NA other upstream 673214 11640816 ~ 11647619 (-)
G140757 NA other upstream 726404 11694006 ~ 11733762 (-)
AMCG00003138 NA other upstream 1760636 12728238 ~ 12739807 (-)
AMCG00003144 NA other upstream 1883419 12851021 ~ 12855341 (-)

Expression


Co-expression Network