G140567


Basic Information

Item Value
gene id G140567
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 11011138 ~ 11037311 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU176798
TGAtgcacatcaaaataaaatttaatatattcacatatatcACTTCTTGAACACTAGTGCATCTATattaatgtacaaaataaatggatccTATACCTTTGTGTCACTAAATAAGGCATGCGTTCATCATATAGTTTCAGACATTTAAAGCTACAGGTTGTCTTACAGTAGGACTCACAAACATTCAACCACAGTACACATAAAGCATACTGAAATATCAACCGCTTTTTCTCTCCTAATAAGCTTTCTGCCATTTGTACAGGGTGTACAGCAGGGAGTTTACACAACACCTATCTCACAAAAGCAACAAGATATACCACAACTGGATTTGTTTGAGTTTCTGAACACTGAGTAAGTTCTGAGTATTTTCAGAGAAGTTGGGAGGTGAAGGCAAGAGATCTCATGTTggatattgtatttgttttgttttttaaagcataacATGTACCTGTTAAAAACTCAGAGAAAGTACCAAGTAAGGTGTGAAACGGCATTAAACGGAGATGCAGCTGTGACTCTTGTATAATCCTTTTTACACAACTCACCACATCTTTGCAACAGCACACAAAGGATATTTCTGTGGAGAAATAGCACCCTCTGGTGGAAAATGCAGGAAGTGTTCTCACCATCACTTGAAACGGGAAAGCCTAGATTTAGACGCTTCATAAACGTTAAAGGAGCAAAAATACGAAAAAATATGTAACCGTTAATCAGATTGACCAgtcctttaatatttaatcgATATCTATACTAATGGATATTAATGTATCCATAATACTCTGAGAATTTGGGTGGGCTGGTATTTGTGTG

Function

GO:

id name namespace
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation

RNA

RNA id representative length rna type GC content exon number start site end site
TU176798 True 810 lncRNA 0.36 2 11011138 11037311

Neighbor

gene id symbol gene type direction distance location
AMCG00003079 NA coding downstream 54737 10954588 ~ 10956401 (-)
AMCG00003081 NA coding downstream 59701 10945019 ~ 10951437 (-)
AMCG00003078 NA coding downstream 87560 10919149 ~ 10923578 (-)
AMCG00003080 NA coding downstream 98557 10907992 ~ 10912581 (-)
AMCG00003071 LOC106591176,LOC103370034,LOC106591308,LOC103383202 coding downstream 203405 10794054 ~ 10807733 (-)
AMCG00003089 tacr2,LOC107666460 coding upstream 3026 11040337 ~ 11047762 (-)
AMCG00003106 hnrnph3,LOC108438202 coding upstream 100886 11138197 ~ 11166902 (-)
AMCG00003097 NA coding upstream 133229 11170540 ~ 11175031 (-)
AMCG00003104 ccar1,LOC107708455,LOC107747452,LOC107582549 coding upstream 170162 11207473 ~ 11224433 (-)
AMCG00003099 LOC107089835 coding upstream 187924 11225235 ~ 11230377 (-)
G140546 NA non-coding downstream 43536 10965532 ~ 10967602 (-)
G140537 NA non-coding downstream 81166 10926118 ~ 10929972 (-)
G140521 NA non-coding downstream 191979 10818769 ~ 10819159 (-)
G140458 NA non-coding downstream 354141 10653325 ~ 10656997 (-)
G140456 NA non-coding downstream 387396 10622606 ~ 10623742 (-)
G140588 NA non-coding upstream 70085 11107396 ~ 11107604 (-)
G140648 NA non-coding upstream 196357 11233668 ~ 11308389 (-)
G140704 NA non-coding upstream 295118 11332429 ~ 11333684 (-)
G140742 NA non-coding upstream 560747 11598058 ~ 11599956 (-)
G140756 NA non-coding upstream 588114 11625425 ~ 11626381 (-)
AMCG00003049 NA other downstream 679766 10301800 ~ 10331372 (-)
AMCG00003017 NA other downstream 1403822 9596943 ~ 9607316 (-)
G140015 NA other downstream 1773408 9236658 ~ 9237730 (-)
G140006 NA other downstream 2163298 8847032 ~ 8847840 (-)
G139933 LOC108443181 other downstream 2516542 8485361 ~ 8494596 (-)
AMCG00003110 LOC107699307,LOC108442385,LOC108263686,LOC107727357,LOC105890865,LOC104955882 other upstream 571152 11608463 ~ 11622649 (-)
G140758 NA other upstream 603505 11640816 ~ 11647619 (-)
G140757 NA other upstream 656695 11694006 ~ 11733762 (-)
AMCG00003138 NA other upstream 1690927 12728238 ~ 12739807 (-)
AMCG00003144 NA other upstream 1813710 12851021 ~ 12855341 (-)

Expression


Co-expression Network