G140632 (eif4e1c,LOC108444323,LOC103032634,LOC107708453,LOC107690176)


Basic Information

Item Value
gene id G140632
gene name eif4e1c,LOC108444323,LOC103032634,LOC107708453,LOC107690176
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 11245256 ~ 11247278 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU176900
ATTGTCATGATGGCTTCCCTATTTTGGCAGTTTCCTGTCCAGATGGCTAGTTTGTCCCCTTTTGGTCTAACATTGACGACGGCACCGCAGACATCTTCACTGGCTTCATCAAAAGACTCGCCGATTAAGCACAATAgCGTCTCCATCCAGTACCGGTCCAAGTCATTATGTCTCTGCTGTTTGCCAAGTGTCATTAACCACCTGCCTCCCAGTTTATTTCGGTCATCTTCCCACATTGGTTTTATTCCATCCTTAAATAAACAATAGTCGCATCCAAATCCAAGCTTACTAGGTTGCTGTATGTGATTGTAT

Function

symbol description
eif4e1c Predicted to enable RNA 7-methylguanosine cap binding activity and translation initiation factor activity. Predicted to act upstream of or within translational initiation. Predicted to be located in cytoplasm. Predicted to be part of eukaryotic translation initiation factor 4F complex. Human ortholog(s) of this gene implicated in autistic disorder. Orthologous to human EIF4E (eukaryotic translation initiation factor 4E) and EIF4E1B (eukaryotic translation initiation factor 4E family member 1B).

NR:

description
eukaryotic translation initiation factor 4E class I third member

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU176900 True 312 lncRNA 0.44 3 11245256 11247278

Neighbor

gene id symbol gene type direction distance location
AMCG00003096 NA coding upstream 5952 11233448 ~ 11239304 (+)
AMCG00003090 NA coding upstream 91155 11146588 ~ 11154101 (+)
AMCG00003091 rufy2,LOC107725492,LOC107743555 coding upstream 105430 11118965 ~ 11139826 (+)
AMCG00003092 NA coding upstream 139903 11052987 ~ 11105353 (+)
AMCG00003085 hk1,LOC107676584,LOC107666459 coding upstream 205928 11019042 ~ 11039328 (+)
AMCG00003094 slc25a16 coding downstream 53039 11300317 ~ 11307482 (+)
AMCG00003093 alox5,alox5a,lox5,LOC107678516,LOC107589586,LOC107747471,LOC107708393,LOC107582511 coding downstream 62412 11309690 ~ 11331126 (+)
AMCG00003095 NA coding downstream 84107 11331385 ~ 11356730 (+)
AMCG00003108 NA coding downstream 255749 11503027 ~ 11504004 (+)
AMCG00003109 NA coding downstream 299123 11546401 ~ 11548788 (+)
G140612 NA non-coding upstream 35754 11207506 ~ 11209502 (+)
G140436 NA non-coding upstream 588265 10653333 ~ 10656991 (+)
G140435 loxl4,LOC103368016 non-coding upstream 612767 10632263 ~ 10632489 (+)
G140434 NA non-coding upstream 617374 10624763 ~ 10627882 (+)
G140351 NA non-coding upstream 955321 10288437 ~ 10289935 (+)
G140692 NA non-coding downstream 233527 11480805 ~ 11481037 (+)
G140694 NA non-coding downstream 240952 11488230 ~ 11490662 (+)
G140723 NA non-coding downstream 290369 11537647 ~ 11537954 (+)
G140738 NA non-coding downstream 384685 11631963 ~ 11633525 (+)
G140857 NA non-coding downstream 907535 12154813 ~ 12158751 (+)
G140613 NA other upstream 33145 11209573 ~ 11212111 (+)
G140478 nkx23,LOC106591187,LOC101065636,LOC101073339,LOC101063040,LOC104962797 other upstream 488416 10754901 ~ 10756840 (+)
AMCG00003066 LOC105931228,LOC105012084,LOC107588449,LOC107706116,LOC108435714,LOC103374338,LOC103154480 other upstream 561644 10680771 ~ 10683612 (+)
AMCG00003019 NA other upstream 1391803 9844776 ~ 9853453 (+)
G140189 NA other upstream 1464804 9778250 ~ 9780452 (+)
G140693 NA other downstream 238913 11486191 ~ 11487884 (+)
AMCG00003129 rab11fip2,LOC107585298,LOC107733785 other downstream 1124721 12371999 ~ 12678159 (+)
G140939 NA other downstream 1483453 12730731 ~ 12739767 (+)
AMCG00003141 LOC105923605 other downstream 1631407 12878685 ~ 12882998 (+)
AMCG00003158 NA other downstream 1859178 13106456 ~ 13110634 (+)

Expression


Co-expression Network