G140648


Basic Information

Item Value
gene id G140648
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 11233668 ~ 11308389 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU176916
TGACAGACAAGAAACAGTCACTGTTATTCTACTTTCCACTTTTGTAGAGAATCAATTTATTCACactttttcatttgctttaacATAGAAGGCCACAGTGAAAatggataaaagaaaaaaagacttgtgTATAGTGTGCTCATTGATATTGTACAATTACACAAGATACACACCACACTTTGATTGAACTGACTTGTTCTATGTACAAGCAAAGACATTCCCATAGAGACTGGTTGATGGAACAAGTTCATTTTGGTGCATCTGCAACTTAACATCAGAGACCTTTAAGGTAAGCAACAGTGCATCATTAGAAATTAGAATTCAGCATATAATGTTACAAGACAGAGTTTCCAGGTGCAGATATAATCAGTCACACACCACAAATATGTGTTGCAAGTATAAAGCATAGAATGATACATGTTTATCAGCAATTTGTAATTTGACAAGTTTGGAAATTAAAACTGTGTACATAGTTTTATAGGTTTTAGTGACAGCAGCACAATTCTAAACCGATGACTGATGAAATACAGAAGATCAAGAACATTCTCCAAAACCATCACGTATCCACTATCTACTTTGCATACAGCAGACATATTTAACACCAGAATGAATATGTACagttttacaatttacataattacattgaaCATTACCCACTGAGTTTCGTTACATATTGAAGAAACCATATCTTTCCAAGAATTTCCTTTTAATGTACTGATTTTGCTTCATACGTCTGTCTCACCACATTgtacaaactgaaatattgtaACTTTCTACagtttaattacattgttttaaatgtatttcccatAAAACTGATTCAgataatgtaaattgaaattcTGGCACACACCCACCCAAATTTTAATAAAGGTCTACAAAAATTATGTACCAGAACTACACacgtacaaaaaaaaaaaaaaaaaaaaaaaaaaatgcgtgTATACACATCAAAGGACTGTGGGCCCACAAGCTTCTGAGATGAACAAGAGTCTTTGCTTTCAACTGTTGTTTTGGATTTACAATGATCAAATGGACAATTGTGCTCACTCTTGAATATCCCAATGTATAAACTAGAAcatctttttattcatttacatttcacagttaTACTGAActtttacacaaacaaatagaaGACTGCAAAAGATGTGGAATGAAAAGACCACACCAGAGTGATTAAAAGCTATTAAGAGTGATCTCTCAATAGTGTAAATTTAGTAACGTACCtctttttgtttcatatttgttaCAGAAACTGATTGTTGCGGATTACATTGGTTGAACCAAAACATTACAAGGGTATTCCCTGTACTGTTAGTACATACCATAATTAGCATGAAGTGGTACTGCAGCTATGTCCTTAGtggaaaatacattagaaaccaAATGGGTGTGAATTgattaatcataaaaataaaaaaaatccattctAGAGAACATAatgatatttttcataaatatgtacatgtgACTAATAGATTATAATCATGAATATATACCGAAGATAGAAGACCTTCATTGCAGTACAAGATTACACTGTACATCTGCAAGTTAATCTGATCATAAACGCTTTGGAGATGCAAAAAAGGCAAATATCGCCCCCATGTGGGCATTACACCTAAAACCTTTTACAGCCACAGTCTATCCATACTGGGAGTGCATAGCCAATttgcaaatacacatacatatacagctctggaaaaaattgagacaacataacattgatttctgaacttggagtggtctcactttttttccagagctgtGTTTGAAGATGCTTTTGCCATGTCTCAGCATTTGTTGTGTAAAGCAGCCTTTGGTAGAATAAAGCCAAAACAAGGGTATCTAGGCCATTATAATCCACACAAGTCCTTATCATTTAAACCAAATATTTACATGAACAGTAAACACACAATTAACCTGAATGTTTGCATTTAGGATATGCATAGAATAGGAAAGAATTAAGCTCAGTCAAGTTAATTTGCAAGAGgggttctcttttttttcaacAAAACCCTTCAAATTAGCCACACAGTCTATAAATTGAGAAATTCATGATCATGAGAAAGCATCTaatttttcaaaacataaaaccattttaatttaccAGGTGCaggataaaataattaaagcaggCAGTAGTGGAAGAGATTCTCAAGTGTAGCCAAAACCATTAAAAACCCAATAAAGCCCCCTCagaatttaacaaaacatacaaaggACAGTGATTAAAACCAAggcaaaatacagaaacactCCTAGTGCAATTCAAAAGGTTTGATCTCCCTCATTTTCATTTCCCCACTAGTTAGTGTAGAAGGTGGTGGCCCAGCAACACAGAAATCAAAGCACTACATACCTAAAAACGTACAAATTGTAGATGGTAAAGCTAACCACAGATTTCACCTGGTAGCTTATAGCACAGTGCCACTCAAACACTCGCTTCCTTgtagagaataaataaaaggaaaccctatacatataaaaataatcaattcagTGTATAAGAGTCCAGTCTATGCCACAGAAATCAGGGCAATTCAAAATAACCGAGTACATGCTTCTTGTTAAGGTGATTTTACAGCAATGGCACAATCATTCTGCATTAGGGGTAATAAAGCCAAAGGGAGGTTTCTTGGCCTCACTCTCAACAGAATTGGGGGTTCCTTGGTTTCTGGGAAATCGGTGATCAATTGAGGTGCAGCACCTGCTTCATGAGCTCATAAGTGGTGAAGGCCACAGCTTGGGAGGGCACACAGCGGATGTAGTTCAGAGACAGACCACGATAAAGTCCTCCTTTTACTCCATATTTGGTGTACACATACTTCAGGGTCTTGG
>TU176917
TGACAGACAAGAAACAGTCACTGTTATTCTACTTTCCACTTTTGTAGAGAATCAATTTATTCACactttttcatttgctttaacATAGAAGGCCACAGTGAAAatggataaaagaaaaaaagacttgtgTATAGTGTGCTCATTGATATTGTACAATTACACAAGATACACACCACACTTTGATTGAACTGACTTGTTCTATGTACAAGCAAAGACATTCCCATAGAGACTGGTTGATGGAACAAGTTCATTTTGGTGCATCTGCAACTTAACATCAGAGACCTTTAAGGTAAGCAACAGTGCATCATTAGAAATTAGAATTCAGCATATAATGTTACAAGACAGAGTTTCCAGGTGCAGATATAATCAGTCACACACCACAAATATGTGTTGCAAGTATAAAGCATAGAATGATACATGTTTATCAGCAATTTGTAATTTGACAAGTTTGGAAATTAAAACTGTGTACATAGTTTTATAGGTTTTAGTGACAGCAGCACAATTCTAAACCGATGACTGATGAAATACAGAAGATCAAGAACATTCTCCAAAACCATCACGTATCCACTATCTACTTTGCATACAGCAGACATATTTAACACCAGAATGAATATGTACagttttacaatttacataattacattgaaCATTACCCACTGAGTTTCGTTACATATTGAAGAAACCATATCTTTCCAAGAATTTCCTTTTAATGTACTGATTTTGCTTCATACGTCTGTCTCACCACATTgtacaaactgaaatattgtaACTTTCTACagtttaattacattgttttaaatgtatttcccatAAAACTGATTCAgataatgtaaattgaaattcTGGCACACACCCACCCAAATTTTAATAAAGGTCTACAAAAATTATGTACCAGAACTACACacgtacaaaaaaaaaaaaaaaaaaaaaaaaaaatgcgtgTATACACATCAAAGGACTGTGGGCCCACAAGCTTCTGAGATGAACAAGAGTCTTTGCTTTCAACTGTTGTTTTGGATTTACAATGATCAAATGGACAATTGTGCTCACTCTTGAATATCCCAATGTATAAACTAGAAcatctttttattcatttacatttcacagttaTACTGAActtttacacaaacaaatagaaGACTGCAAAAGATGTGGAATGAAAAGACCACACCAGAGTGATTAAAAGCTATTAAGAGTGATCTCTCAATAGTGTAAATTTAGTAACGTACCtctttttgtttcatatttgttaCAGAAACTGATTGTTGCGGATTACATTGGTTGAACCAAAACATTACAAGGGTATTCCCTGTACTGTTAGTACATACCATAATTAGCATGAAGTGGTACTGCAGCTATGTCCTTAGtggaaaatacattagaaaccaAATGGGTGTGAATTgattaatcataaaaataaaaaaaatccattctAGAGAACATAatgatatttttcataaatatgtacatgtgACTAATAGATTATAATCATGAATATATACCGAAGATAGAAGACCTTCATTGCAGTACAAGATTACACTGTACATCTGCAAGTTAATCTGATCATAAACGCTTTGGAGATGCAAAAAAGGCAAATATCGCCCCCATGTGGGCATTACACCTAAAACCTTTTACAGCCACAGTCTATCCATACTGGGAGTGCATAGCCAATttgcaaatacacatacatatacagctctggaaaaaattgagacaacataacattgatttctgaacttggagtggtctcactttttttccagagctgtatgtatattatataNNNatatatatatatatatatatatatatatatatatatatatatacacaca

Function

GO:

id name namespace
GO:0070546 L-phenylalanine aminotransferase activity molecular_function
GO:0080130 L-phenylalanine molecular_function
GO:0008793 aromatic-amino-acid molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU176916 True 2841 lncRNA 0.35 2 11305471 11308389
TU176917 False 1835 lncRNA 0.32 2 11233668 11308389

Neighbor

gene id symbol gene type direction distance location
AMCG00003099 LOC107089835 coding downstream 3291 11225235 ~ 11230377 (-)
AMCG00003104 ccar1,LOC107708455,LOC107747452,LOC107582549 coding downstream 9235 11207473 ~ 11224433 (-)
AMCG00003097 NA coding downstream 58637 11170540 ~ 11175031 (-)
AMCG00003106 hnrnph3,LOC108438202 coding downstream 66766 11138197 ~ 11166902 (-)
AMCG00003089 tacr2,LOC107666460 coding downstream 185906 11040337 ~ 11047762 (-)
AMCG00003102 march8 coding upstream 52038 11360427 ~ 11374048 (-)
AMCG00003101 NA coding upstream 130976 11439365 ~ 11455653 (-)
AMCG00003103 fam21c coding upstream 147851 11456240 ~ 11478384 (-)
AMCG00003105 hells coding upstream 243302 11551691 ~ 11562305 (-)
AMCG00003114 gbf1 coding upstream 491266 11799655 ~ 11802872 (-)
G140588 NA non-coding downstream 126064 11107396 ~ 11107604 (-)
G140567 NA non-coding downstream 196357 11011138 ~ 11037311 (-)
G140546 NA non-coding downstream 266066 10965532 ~ 10967602 (-)
G140537 NA non-coding downstream 303696 10926118 ~ 10929972 (-)
G140521 NA non-coding downstream 414509 10818769 ~ 10819159 (-)
G140704 NA non-coding upstream 24040 11332429 ~ 11333684 (-)
G140742 NA non-coding upstream 289669 11598058 ~ 11599956 (-)
G140756 NA non-coding upstream 317036 11625425 ~ 11626381 (-)
G140764 NA non-coding upstream 478025 11786414 ~ 11789926 (-)
G140763 LOC106513751,LOC103376442,LOC107375490 non-coding upstream 487587 11795976 ~ 11797014 (-)
AMCG00003049 NA other downstream 902296 10301800 ~ 10331372 (-)
AMCG00003017 NA other downstream 1626352 9596943 ~ 9607316 (-)
G140015 NA other downstream 1995938 9236658 ~ 9237730 (-)
G140006 NA other downstream 2385828 8847032 ~ 8847840 (-)
G139933 LOC108443181 other downstream 2739072 8485361 ~ 8494596 (-)
AMCG00003110 LOC107699307,LOC108442385,LOC108263686,LOC107727357,LOC105890865,LOC104955882 other upstream 300074 11608463 ~ 11622649 (-)
G140758 NA other upstream 332427 11640816 ~ 11647619 (-)
G140757 NA other upstream 385617 11694006 ~ 11733762 (-)
AMCG00003138 NA other upstream 1419849 12728238 ~ 12739807 (-)
AMCG00003144 NA other upstream 1542632 12851021 ~ 12855341 (-)

Expression


Co-expression Network