G140872


Basic Information

Item Value
gene id G140872
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 12286047 ~ 12286276 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU177201
tggggagtttgttccagattgtgacgcctctctgtgtgaagaagtgtctcctgttctctgtcttgaatgccttgaagcccaatttccatttgtgtccccgggtgcgtgtgtccctgctgatctggaaaagctcctctggtttgatgtggtcgatgcccttcatgattttgaagacttggatcaagtccccacgtagtctcctctgttccagggtgaaaaggttcagttcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU177201 True 230 lncRNA 0.50 1 12286047 12286276

Neighbor

gene id symbol gene type direction distance location
AMCG00003125 emx2,LOC107666392,LOC107711418,LOC107733718 coding upstream 46667 12234557 ~ 12239380 (+)
AMCG00003121 slc18a2,LOC107670861,LOC107689804,LOC107715963,LOC107744594 coding upstream 132696 12134125 ~ 12153351 (+)
AMCG00003120 NA coding upstream 155142 12122044 ~ 12130905 (+)
AMCG00003122 NA coding upstream 274031 12002034 ~ 12012016 (+)
AMCG00003116 NA coding upstream 355946 11924327 ~ 11930101 (+)
AMCG00003128 NA coding downstream 395466 12681742 ~ 12682422 (+)
AMCG00003131 LOC107682932 coding downstream 414852 12701128 ~ 12708232 (+)
AMCG00003139 NA coding downstream 437050 12723326 ~ 12723550 (+)
AMCG00003130 NA coding downstream 457470 12743746 ~ 12747836 (+)
AMCG00003140 sirt1 coding downstream 583751 12870027 ~ 12875034 (+)
G140857 NA non-coding upstream 127296 12154813 ~ 12158751 (+)
G140738 NA non-coding upstream 652522 11631963 ~ 11633525 (+)
G140723 NA non-coding upstream 748093 11537647 ~ 11537954 (+)
G140694 NA non-coding upstream 795385 11488230 ~ 11490662 (+)
G140692 NA non-coding upstream 805010 11480805 ~ 11481037 (+)
G140961 NA non-coding downstream 535599 12821875 ~ 12831106 (+)
G141066 NA non-coding downstream 825461 13111737 ~ 13111936 (+)
G141156 NA non-coding downstream 1274322 13560598 ~ 13560839 (+)
G141220 NA non-coding downstream 1556903 13843179 ~ 13843515 (+)
G141222 NA non-coding downstream 1558470 13844746 ~ 13844952 (+)
G140693 NA other upstream 798163 11486191 ~ 11487884 (+)
G140613 NA other upstream 1073936 11209573 ~ 11212111 (+)
G140478 nkx23,LOC106591187,LOC101065636,LOC101073339,LOC101063040,LOC104962797 other upstream 1529207 10754901 ~ 10756840 (+)
AMCG00003066 LOC105931228,LOC105012084,LOC107588449,LOC107706116,LOC108435714,LOC103374338,LOC103154480 other upstream 1602435 10680771 ~ 10683612 (+)
AMCG00003019 NA other upstream 2432594 9844776 ~ 9853453 (+)
AMCG00003129 rab11fip2,LOC107585298,LOC107733785 other downstream 85723 12371999 ~ 12678159 (+)
G140939 NA other downstream 444455 12730731 ~ 12739767 (+)
AMCG00003141 LOC105923605 other downstream 592409 12878685 ~ 12882998 (+)
AMCG00003158 NA other downstream 820180 13106456 ~ 13110634 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other downstream 1438634 13724910 ~ 13743543 (+)

Expression


Co-expression Network