G140939


Basic Information

Item Value
gene id G140939
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 12730731 ~ 12739767 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU177286
AGTCAATAATCAGTTCATGTTCTAAACAgaacatacagtacagtatccaAAGTACTGCTCAGGTAACAttattaattcacattaaaagtattttatcatCTTgtgataggaaaaaaaaaaaagtctatataCACATCTGTGTGTTTACAGGGATAATATACAAGAAAGATGCTACACAATTATTGGAAAGTTGCAGTTCATTCAGAATTAATTCTACATGATTATTCTTTATCCCTGTAACACATGTTTAAGAAGTAGCTTTCTGAAATCACTGAATAGATTCCCCAAAAAGCACCTTTTCTAAGGTTTTCTGGATAAAAGTGAACAGTGTTTTTTGGTATTGCACAACTGAAGTCTGAGGTAGGGTAAATAGGCAACCGAAATCACATCACCAGTGGTGGAGTGCCAATTCCAATGTCATGATTCACAACAGTTCATGTTAAACAAGCTTATTAATACCACATTTTATATTGATCTGGCTGATTTAACATTtctagtaaaaaaataataataataaaaaaaaaaacatggattgCAAAATAGCCCAACAATGACTGATTTGTAGCTCTTTCTAGTGCAGAAAAACACAGTAGCTCTATTTTACAGCTACTGCAATTTCAACtgattagaaaaacatttaacatttatgtaATTTCAAAAGGGTAAAACATGATGCATGCTTGTAATGTTACccatggaaaaaaaagttaacataGAAAAGGCTAGTTTGGGAAAGAACGGTTGCATCAATGGTTGTTGGGCATATTTAGCCACCATCACAGTAATAGCATAGCTTAACACATTCAGTAGTATGTAGTCTATGAAATAGCAGCAACAACTATAAATATCACGTGATTTTTTGCAGACTGTGGTCAAGTTCTTTTGGTGGTAGTCTCTTAAAGTCCTCAAAAGACTGTTCCCATGATCCATCTTGAAAAGTCCAAAGCTTTCTTGGAACAACAACATATTCACAAGAAATGCTGCATAAAGTACAGCAccaaaaaaaatcttcactgAAGTATATGGTTTCATCTGGCATCCACAGACTTCCTCTGAATGTGCTGCTACGGTAGATATGATCCACTTTCCTGAGAAGTCTTTTCAAAACCAGTTGTTAAGCATTAagcattcattttcttatttcttttttaatttataaaggcTTTGTCACTTGTAGTGTTTAACTGGATTGGGAGGTCACATTTGCCAGCTGAAATCTCAAAGCCCGCTCAGCCATACAGATAGGTCCCCGAGTGTGTTCTGGGCTCTAGAGCTCGTCTTCATCCTTTTAAACTGAACTTCCTCCAAGAATGCCACTTTTTCTTTAACACTTTTAATAGGGGACCGAGGgattttttgcacattttagtaattaacCGTTAAGTCAATTAATTTAACATCTGCTTTTCTCCTCATAAAAGTTCCCACCCAAAAGTTCAAATTTCTCCTTACATACCAAAGCCATTGATCATCTACATATTTGACACatttctcaatttaaaaaagtcGATTTTTAACAAGATGATATTGTGAAAGCAGCACTTTTAAATTGCCATTGTATCATTTTAACATCTGTCTCCATCCCAAGCATACAATAACCAGCTCAAACTATAATGCTATGCATCTTCATTATGTAATACTGTGTGAATGGTCTTTGTTCATTGTTGAATTTCATCCATTTCCCAAAAGAAGATTACAATTGAAACTAACGGCACAAACCACTAAACACACATTAAACGTACAGGACTTGGATGACAAACATTTAAGaccttaaaatcaataaaaaaagaatactatGGGAATACATTCATTCGTCACTGAGGCAACTGGGTACAACTGGTGTTCTGTAAACCTGAAGGCATTATTGTAAAGAATGAGAAAAGTAAGGGCTTCCCACAGCTAtattcaaatggaaaaataagataaaaacacaagcacacgTGCTTGTGCTTTGTCCCTCCCACTCTCGTTCACTACAGTTACAACAACCccttcaacccccccaccctcaacTAATCTAAAAGACTGCCATGCCTATGCAATATTCTGGGGGGGATCCCTGAAAGTGGcatcaaaactaaaaaagatGTTATGTTGagcatacaatataaaataaactacaaagaTCAGTACCTACACTACCTTGCTctataacaattaatacaaattagttCAACCATATGCAAGCACGTTTCTCATACACCTGTGTGAGAGAAAGGGTAACAGTCCATGATTATACCATTGAGCAACAGCACTCTTACCCTTGGATTTGCTGGCTTATTATGATAAAATTCTCAATTCATTGTTTATGTAATCATCCAACAGTGGGTATTCAAACAGTTTTGTGCCTTCAGAGTCAACTTCTTCATCCTCATATTCAATAACAAATGAATTCCTATCATCTGTACAGCGCAAAACCCTGCCGGGCCACCAGGTCTCCGCACCATCCTCGCTACTTACAAACATGTGCTCTACCTTCTTCCCTAGAAGGTTGTGAGCAGTTAGTGGTAACAGCTTcacattgtcctgctggaagtcCTTCCATAAATCAAACCACCAGGTCATCTGGCATTCATCATACTTGAGCTTAAAGGTTTGCCCTCGTCCTTCTTCCCTCATTGCAATGACTGTTCCCTTATAccagttttttttctcattttcctcAATTCCATGCTTTACTCTCTTTCCTAGCAGTTGGTCAGGATGGGTCACTTTTGGCAGTTTCAACTCATCCAAgcccattttctttcttccactATCTCGGACTTTAACCTGCAGATTAAAAGCTTCTTGCAAAAAACGTTGCTTTTGTTTGATAACATCCCAAGATGATGCTGGACTACTATCCATGTCTGGGCTAAACTGTACCCTTGGTATATTACTAGCCTTTACTGGGGTTACCTCTACCCCTGCCTTCACTGCTGGACTACGGCCCTTTTGCGGGGTAGACTTCCCTTTCTTTGCTGGTGTACCCTTTACCTTTCTAGGAGTATTCAGTCCTCTACATCTGATGGTTGGATCGATTTGTGGTGTGGATTCttcttgcttttttattgccaatttcaaattaatcacaaGATCTTGTAGGTTAAGATTCCTGCCTTTTTTTGAAGTGTTGAAAATCCCTTGCTCATTTTTCATACCCAAAACAAATCTTCTGAATTTGAGTTGAGAATTTACAGCTACAGACGCAGTCTCCTCATCTAAATGTTCTATCTGTTCATCTACCTGTCCTTCAGTGTCCCACAGGCCTCCATAATTGTTCAAGTCAACAGTCAGCTTCTGTTTGATAGTAATTTCACTGTCTTCACATTGTGGTAATTTGCATGGTCTTTTATCATTTATCTTTAGTCTTTCctcattaattttctttatcCTCTCACAAAAGATAGCCTTCTGCTCTCTTACTGAACGTCTAGCTATTGCCAACACCTCTTCCTTCTTTTTCGAGTCCAAGGTAGAGAGCCACTCCCATGTCCTGTTCTCTTTGAACATGACCATTCCTTCAAGAGCAATGCCTGTTGCATTTGTCTTGACCCTGAGCAACTGATCAAACACTCCAAAATCTCTCTCGCAACTAACATTCGTTTTAGGAACGGACTGCATTCTTTCAGCAACATCTTCGGTTACCTCATCATACCTGCCATGCTCCAAATGATCAGCTAACATTCTGCAGCAAACTTTCAAAAAACTGGCAAGGATTAATTCAACAATCTGTACAGTCAGCTCATCAAACTCTGGATTCACACTTGCGATTAGGTTGTCAAACACAGGCCCACCATTCATTTCTACATCATCGAACAGATTCATCTCCCCTCTGACCAGTTTCATTCCATCTTTCTGCAACTCCTTTAGCTTGGCAACTAGAGTTTGGTACCGGTCGTTCATTTCCAACACATGCTCTTTCAAGGATAAGACTCTCCAAAGTGGCTCAGTGATGAACTTTGAAACCAGTCCAAGAGCCCTGCATCCAGCCACAAACTGCTGAACATTCAAATCTGCATTCACTTCAGCGAAGAGGGGTTTATCATGTTGAAATTTAGCAGTAAACTCCACCAACTctgtatacaaaaaataaactccaGCTGCATTGTGAAAAATGATATTAATTCTGTGACCTCTGAAAGGGGAGAGTGGCACTGGgtcagatttatttttgctcGCCCAAAAGCATTTAAACTGAACAGGCTTTCCTTGTTCAACACAACCTTTATCATGAACAGCTTTACATACAGTCCGGATTAACCGGATTGTTCCAGATTCTGATGTTTCTTTGGTCGCATTTGGAAGGCATTGGGAACCCACCTGATCATTTCCAAATATCAGTTTCTCCCAGACTGAAAGTGTCGCATTGGCCTGATGAGCCAAACcatcaattaaatgcaaaccACAGAAAAGTTCATTGACTAGGGAAAGCTTTGCCTTTTCAGATTCACTGTAGTTGTCATATCCACCAACAATTTCAGGCAGAACTTCTGACCTGTAATCTGAGAGCATGGAGTTGAATTTCTTTTCAGTGCTTGCTCTATCTCCAAAAAGATTGGTTATTTTGGCAAATACTTCATTTTGTTGACGAACTACATTTTCCTCAGCAGTCCCTGGACTTCTCACGATGTCTTGCACCATTTCTTGTACCGTTTGAAGAATAGAACTAGCAGAACCTGACGATTGCTCCCTGAGGCCTATGTGTAGGCGAGTTCCGTCTTTCAAAAAGACTCCTGCTGTGCCATATTTATGTCCAAATTTAGTTGTGCCATCAGTGCAGAGTGTGAGGTTAGTTTCAGTAGAAAGGGTTTCCTTCACCTGTTGAAGAGCTACTTGTCTTGCTTCTACATAGAACGATCTAGAACTAGTTTCCCTTGGTAGTCTGTCTACTTTCATACCAGCCAGTTTTACCAACACAAGCCTGACAACATCAGAAACCTTGTTAGAACTAACGCCCATGTTTGCCATTAGATCCATGTACACTTCtcttattttgtcattgtaCTTTGCATTTTCATAAGTTGGTAGTTTTCTCTGTACCAAAATGTCCATCTCATCCTTGATTTCGGTGTATCTACCCTGCCAAAAATATATCTCTTCATTTAATCTTTTGAGTCTCATGGAGAAGGCTGGATCACTATATTTCACCTTCGTTTCCTCTTTACGTTTCTTGTGGTAATTCATTCGCATatgctcctttttcttttcatatttgattttcttCACATCCTGCTCAAGAATGATATTTCGAAGCTCCAgatttctttttgcatttttttcctgcTCATATTGTGCagctatattatttttttcctgcgTCAGTTCTGATACTTTATTCTCTAGCTCCTTTATCTTATTATCACGACGCCTCATCCTTTTATTAATGTTACGAACACACAGCCTGGTTAGCTTTACCTTTGCTTTATCATACTTCTCCGTCATATGCTTGAGTTCTGCTTTAACTTCGTGacattttttccctctttctgtcCTTTGCTCAATAAGCTGTGCTTTTTGATCCTTTAGCGCATCACATTTTTCTCTCAGCTTCTTTATTACCTCAGTTTTTGTTTCTACATCTGCTTTAAGGGCTTCAAATTCATGCCAGTCTGCTACTTTCTCAGTTTCACATTTACTAGTGCTTTCAGTTACAAGTACCAATTCAGACTTTTTTACCCTAGGTTTTCGTGTGAAAGGTAAAGGAAAAATTTGTTTGCAGAAATCCCCCCTCTTGGATGCtgtaagttttctttttttggtgatCATTCTTTGCACAAGGCAGAAAACATCCCCAGAAAAACGTATTCTTTGCGCCTCACTTTCTAGACCAAGATCAAAGTTATattctaaaatattaaatacagcatACTTTAGGGGCAGGTCTGTTTGTCTTGcaaatctatggatttcaagcaCTACACCATTTGTCAGCAAAGCCTTGTCTAATTTTGGTATTTCAATTGTATCTTCTGTTACCTCAAGTTCTATTCCTAActttttacagaaaacatacgTGTCTTTCTCTGCGTGAGAGGTAGGGGGTGAGTACTCCATCTGCTTCATTAAAACATCTGTGCTCTCCCCTTTTTTTGGGCTGAggcatacatttttcttttttcttgggGGTTTACACACATTGTCCACCTGTACTACACAATTAggtgtcatttttcttttatgttggACAGGAACTGGGCTAATCTTTTGTCCTTCAACACTTACTTGTCCCTCAACATCAGGAAGCTGGAGAGCCTTCTGTCCCTGAATAGGAAGTAGGCTACTCTTCAGTTCTTGGATAGGAACCTCAACTGGGCTACTCTTCAGTTCTTGGATAGGAACTTTTATTGGACTACTCTTTATATCTTTGGTAAGAAACTGAACTGCGCTACTCTCTAGTTCTTGGATAGGAACTTGCAATGGACTACTCTTTAGTTCTTGGATAGGAACtggtttattgttttcttcctcAGCTATCACTGGGCTACTCTTTAGTTCTTGGATGGGAACTggtttacactttatttttctgataGGAACTGCTTTACACTTTTGTCTATCAACTTTAACTGGGCTAACCTTTGGTTCTTGCACAGGAATCTGGACAACATTTTGTCCCTGAACAGGAAGCAATATACAATTTCCTCCTTGAACAGGAAGAGCACTGTATGTTTGTCCCTGAACTGCGAGCACACTGTAATTCTGTTGCTGGACAGTTTGCACACTGTAGTTCTGTTGCTGGACAGTCCGCACACTGTAGTTCTGCTGCTGGACAGTTTGGAGGCTAATTGCTTGTCCATTTAGAGCTTGGAGACTGTAGGCTTGCCCCTGTATAGGAAGGAGGTTAGTCCTCTGCAACGGCCCTTGGACAGGAAGGGACGCTTTCCATTCTTCGCTGTCGTCAACTTCCTGTTTAATTTGTACATCTTCATCCATTTTTTAAGTCTAACCGATTCAACATAAAGccaaaaaaatctataattgtAACATCTGTCAAACAAGTCCTTGAAAAACACCTTTCAGTACATGTACAAATATATGCACAAAAAATAAGCTTGAGATTGGCTATGGCAATTTAAGTTTTAGCTGCAGTTCTTGCTTCTGCAAAATACCTCTAATGTGGATTGCATTTTGTAAAGGCAAACGAATCAATGAGGCACATGCATAACATAAAAAGTGTGTTATACCCAATTTCTCTTTTCAAACATCAGATTTGATAAATAGTCTAAGAAATGCGCAGTTCATTGTGTTTCATTATGCAGATGCTCCCAGCTTTGACTGTAAAAATACACGGGCTTTTGCTGCACCCACAGCAGTTGTCCTATAGCGCAGCAGCCGCTGTAGCTAcgcatttagaaaacaaacaaaataatgaataataaataaaataacactacaTGCAATGCATAGCAGTACTATAACACATTCCTCAATTCATGGTTTGGAAGAATTCAATACAGTGACTGCAATGTTGTATACATCATGGGCGACAGTAtagatgcattattattattttactaaaacagACCGAATATGGAATCGATGTTTTTCCATAAAGCATgcaacaatgaaaagaaaaaaaatgcaataaaaggcAATATTTGCTAAAGCATCCCGCTGGTTTTAAAGTGTATGGCTGTGTAGTGAATGCACTGCGCTTGCACTAAGCATGGTTACCTGCGTTTCCCTCGGCCCCTATTCCTTTGCTAGTCTGTTTGGGGGACGCGGTCTCCTGGATATTGAGTTTGCTGTCGTCCTTCTCCTTCAGATGAAATCAAGCGAGGCTgcgtactgtatatacagtggcgtgttttcttttcttcttttttttttgcttgcttccttccttcctttctttccaaACCGAGACGAGCTCCAGCACGCAGTCGGTCCCGGGCCGTGAATGGCCAGGCGAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU177286 True 7899 TUCP 0.39 2 12730731 12739767

Neighbor

gene id symbol gene type direction distance location
AMCG00003139 NA coding upstream 7181 12723326 ~ 12723550 (+)
AMCG00003131 LOC107682932 coding upstream 22499 12701128 ~ 12708232 (+)
AMCG00003128 NA coding upstream 48309 12681742 ~ 12682422 (+)
AMCG00003125 emx2,LOC107666392,LOC107711418,LOC107733718 coding upstream 491351 12234557 ~ 12239380 (+)
AMCG00003121 slc18a2,LOC107670861,LOC107689804,LOC107715963,LOC107744594 coding upstream 577380 12134125 ~ 12153351 (+)
AMCG00003130 NA coding downstream 3979 12743746 ~ 12747836 (+)
AMCG00003140 sirt1 coding downstream 130260 12870027 ~ 12875034 (+)
AMCG00003150 NA coding downstream 206037 12945804 ~ 12948577 (+)
AMCG00003149 NA coding downstream 230938 12970705 ~ 12982068 (+)
AMCG00003151 NA coding downstream 260398 13000165 ~ 13000605 (+)
G140872 NA non-coding upstream 444455 12286047 ~ 12286276 (+)
G140857 NA non-coding upstream 571980 12154813 ~ 12158751 (+)
G140738 NA non-coding upstream 1097206 11631963 ~ 11633525 (+)
G140723 NA non-coding upstream 1192777 11537647 ~ 11537954 (+)
G140694 NA non-coding upstream 1240069 11488230 ~ 11490662 (+)
G140961 NA non-coding downstream 82108 12821875 ~ 12831106 (+)
G141066 NA non-coding downstream 371970 13111737 ~ 13111936 (+)
G141156 NA non-coding downstream 820831 13560598 ~ 13560839 (+)
G141220 NA non-coding downstream 1103412 13843179 ~ 13843515 (+)
G141222 NA non-coding downstream 1104979 13844746 ~ 13844952 (+)
AMCG00003129 rab11fip2,LOC107585298,LOC107733785 other upstream 52572 12371999 ~ 12678159 (+)
G140693 NA other upstream 1242847 11486191 ~ 11487884 (+)
G140613 NA other upstream 1518620 11209573 ~ 11212111 (+)
G140478 nkx23,LOC106591187,LOC101065636,LOC101073339,LOC101063040,LOC104962797 other upstream 1973891 10754901 ~ 10756840 (+)
AMCG00003066 LOC105931228,LOC105012084,LOC107588449,LOC107706116,LOC108435714,LOC103374338,LOC103154480 other upstream 2047119 10680771 ~ 10683612 (+)
AMCG00003141 LOC105923605 other downstream 138918 12878685 ~ 12882998 (+)
AMCG00003158 NA other downstream 366689 13106456 ~ 13110634 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other downstream 985143 13724910 ~ 13743543 (+)
AMCG00003182 NA other downstream 1383016 14122783 ~ 14131275 (+)
G141331 NA other downstream 1441013 14180780 ~ 14184643 (+)

Expression


Co-expression Network