G140961


Basic Information

Item Value
gene id G140961
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 12821875 ~ 12831106 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU177315
GCAACGATTTATTAACTTGACcttgatacaaaaatatttaaaaactgtgaTTTTACAGCCCAGTTTATTAGAATAAGATAAACATCttcagacacacatacagttcTTTATGCAACTTATAAAACCTCAAGCACTGTAATGGAGAATTCATTgcagacaaataaaatgttctgcCGGTTTTATTAATCATATTGCAGAAATCTTAATTTCAAAAGTTGGAAAAGATAGAAAACAGGATGTAACCAGCTATACACAAATTCCATTATGTGCTAATAATTctgacattcaaaaataaaatataaataatcagggagaaacaaaatcaaataataattgcCTCTCATCTCTGGAAGagcaatgtttcattttcaagaaGGTGTATATATGCAGAAGATAAAATTTAAACTGAAACCAAGCAAACAATTTTGgtaaaaaaacaggagaaaatgaACAGCAGGAAAAACAAGTTTCGGATGCAAATATCTGTAGGTCTCCAATGTAGTTCATATGCATGTGTACATTGACATTTAtgttcacagatttttttttttttcttctcccccaaATGGTATGACTGCAGAAACCTTCCCAAccaaaaacaaagtgtaaaaacactgaagacaGAGGTCAGTCTTTGTATTTACATGTCGGTTGCAAAGTAGCAGTTCAGTAAACTGTTCTGCAACACATTAAATATCAGGGCTCCAGTACGGAAAACCTTCATAagtttatatacaaaatgtggCCAATCAAAACGTGTAGATAAAGATGTATAGTTTATTACTCTTTGCTTTCTCTTTACAGCAAGTTCATCTCAGTTTCTTTAAAACGTCTATAttttcagacaaaaacaaaaggatacGTGAATAACCATAAATCAACTCTGTGTTAAATGGTTAGAAAAAGCTTACACCACCCCCCGTTTTCTTGGAGactgtatatttaaacagacatattgtatttacaaaacttttaaaacacacagcGGAAGAGAAGCTTGAAGCTACATGTAACATTACAATGGAAATATCAAGTTAGTGTGATTAACAGTTGTTTTGTACAGTATGTTTGCAGAAACTCAGCATATATGCCTAATTCCATATGACATTCACAATTTTTGTAGATTgttgggggaggaggggggaataAAAATCAAGGGAAAACAGCTGAGCAAAACATACAATGGATTCActtaaagcttaaaaaaaagtaaaaaaaaaaaaatctgcagtctATCAAGGTTTAATAATTTTATAAGCAAGAAataggtttatttatataatgaagCACTCTGAAGCAAGGTGCCTTACAAGATGCACACAGACTGTCCAgggaagaacaaaaagaaaatgaagcttCAATTTACAGATTTTGTTGCTGAAGGAAACCGTGTGATGTACATGTAATAAGATGAAAATGTCATGCAACATTTTTATACTGAATGTTTCATTAAGAAAAAGTACTCTGTAATAAATCTGTACATCCAAATACATTTGGGTTCTACATCTAAAGTTACATAATCTTAAGGTCATATACATGTAATATCCCCTATCCATACACTATCTTTAAGTAAAGCCTTCATTCAAACCCaaacataacaaaaagaaaaatggttaaGACTAAACTGGAAAAAAAGGAGGGGACCACATCAAACatccaattaaaacaatttgtcacTTAGACCTCAAAATGTCTAATAAAAACAGCTCACCATTCCTACGTTACATCCGTTTGCTAGCTGTACAGTAAATTGAAGTGCAGAACAAAATACTTTCTGATCTAAGCTTTACTTTTctttggatggatggatttaaaTTACCAATTCGGGCATAATATgagaattaataaaatgacaaataagtAGTAAATGGCATTGGTCCAGCTGTTGCTAAAGCGGATATATTACATGCACTTTTTCCATCTGTACAATGTTGGGTGTGTATGTGATGTTACTGCACAATTACGTTAGCAGTACCTTTTGTGAAAGTatcgggggggcgggggggggggggggggggggggggggggtaaaaaacaagaaaaacaaaataactaaacaaaaaaagaaatggttaCAGAAACTAGAATAATTATGGCATTCTGGGTGACtcggaaaacaaaaaaaacccagaAAGATCCCAGGTCAACGAGTTTAAGCAGCCAACTTTCCCTCTTTCTTACATAATAGAACAAATGCTTTCAATAAACTGTTTGTCCTCTTCACTGAAGAGAGCTAGACTATTCATCAATAATGAGctactttgtttttttgttttgtttttcttttcttttttgggggggtgggtgtgTGGGGGTCTGTGTTGTAGTTACTCCTACTGCATATACTCCAAGCATTTGCTCATGAAAAGTTGGTGAAAGCAGTCAATAAGAACTTAGGATcgatggaaatgttttctttatcctttgtttaggttttttttttccctcctttgtttctttttcaggcATTCAGAAAATGGAAAACCACACTGTACCAAAGTAATATACCCAATCTCCTCTTGCAAAAATGACTTGTGCAAGCTTCTGTAAGAAAAGCCAAAGCTGATCCCCAGATCCGAGTGTTCCCACATTTCTTAGTcaattttcacatttgtgtAGATCTTTCTAACGAAGGCACTTGTTCCCATGTAACCAACAGCCCCtgagaaaacaaagacagacaacaGGAATGACTTCATG
>TU177316
GCAACGATTTATTAACTTGACcttgatacaaaaatatttaaaaactgtgaTTTTACAGCCCAGTTTATTAGAATAAGATAAACATCttcagacacacatacagttcTTTATGCAACTTATAAAACCTCAAGCACTGTAATGGAGAATTCATTgcagacaaataaaatgttctgcCGGTTTTATTAATCATATTGCAGAAATCTTAATTTCAAAAGTTGGAAAAGATAGAAAACAGGATGTAACCAGCTATACACAAATTCCATTATGTGCTAATAATTctgacattcaaaaataaaatataaataatcagggagaaacaaaatcaaataataattgcCTCTCATCTCTGGAAGagcaatgtttcattttcaagaaGGTGTATATATGCAGAAGATAAAATTTAAACTGAAACCAAGCAAACAATTTTGgtaaaaaaacaggagaaaatgaACAGCAGGAAAAACAAGTTTCGGATGCAAATATCTGTAGGTCTCCAATGTAGTTCATATGCATGTGTACATTGACATTTAtgttcacagatttttttttttttcttctcccccaaATGGTATGACTGCAGAAACCTTCCCAAccaaaaacaaagtgtaaaaacactgaagacaGAGGTCAGTCTTTGTATTTACATGTCGGTTGCAAAGTAGCAGTTCAGTAAACTGTTCTGCAACACATTAAATATCAGGGCTCCAGTACGGAAAACCTTCATAagtttatatacaaaatgtggCCAATCAAAACGTGTAGATAAAGATGTATAGTTTATTACTCTTTGCTTTCTCTTTACAGCAAGTTCATCTCAGTTTCTTTAAAACGTCTATAttttcagacaaaaacaaaaggatacGTGAATAACCATAAATCAACTCTGTGTTAAATGGTTAGAAAAAGCTTACACCACCCCCCGTTTTCTTGGAGactgtatatttaaacagacatattgtatttacaaaacttttaaaacacacagcGGAAGAGAAGCTTGAAGCTACATGTAACATTACAATGGAAATATCAAGTTAGTGTGATTAACAGTTGTTTTGTACAGTATGTTTGCAGAAACTCAGCATATATGCCTAATTCCATATGACATTCACAATTTTTGTAGATTgttgggggaggaggggggaataAAAtaaataaaaatcaataaggAGGGGGGATAGTCAGTGGAAAGCAAGCAATGATTCCTCAACGTAAAGTGTTAAAACTTTAGCTCACTGAAAATGACAGGTAATGAATTCCACTCAATTCCTTTATTAATGGTGTTTTCAAGAAATCAAaattgtttacatattttagttttcttactTAATGTGCAGAATAAGCCAATGATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU177315 True 2700 lncRNA 0.34 2 12821875 12824630
TU177316 False 1353 lncRNA 0.32 2 12821875 12831106

Neighbor

gene id symbol gene type direction distance location
AMCG00003130 NA coding upstream 74039 12743746 ~ 12747836 (+)
AMCG00003139 NA coding upstream 98325 12723326 ~ 12723550 (+)
AMCG00003131 LOC107682932 coding upstream 113643 12701128 ~ 12708232 (+)
AMCG00003128 NA coding upstream 139453 12681742 ~ 12682422 (+)
AMCG00003125 emx2,LOC107666392,LOC107711418,LOC107733718 coding upstream 582495 12234557 ~ 12239380 (+)
AMCG00003140 sirt1 coding downstream 38921 12870027 ~ 12875034 (+)
AMCG00003150 NA coding downstream 114698 12945804 ~ 12948577 (+)
AMCG00003149 NA coding downstream 139599 12970705 ~ 12982068 (+)
AMCG00003151 NA coding downstream 169059 13000165 ~ 13000605 (+)
AMCG00003156 pkd2l1 coding downstream 175706 13006812 ~ 13019477 (+)
G140872 NA non-coding upstream 535599 12286047 ~ 12286276 (+)
G140857 NA non-coding upstream 663124 12154813 ~ 12158751 (+)
G140738 NA non-coding upstream 1188350 11631963 ~ 11633525 (+)
G140723 NA non-coding upstream 1283921 11537647 ~ 11537954 (+)
G140694 NA non-coding upstream 1331213 11488230 ~ 11490662 (+)
G141066 NA non-coding downstream 280631 13111737 ~ 13111936 (+)
G141156 NA non-coding downstream 729492 13560598 ~ 13560839 (+)
G141220 NA non-coding downstream 1012073 13843179 ~ 13843515 (+)
G141222 NA non-coding downstream 1013640 13844746 ~ 13844952 (+)
G141224 NA non-coding downstream 1014844 13845950 ~ 13846154 (+)
G140939 NA other upstream 82108 12730731 ~ 12739767 (+)
AMCG00003129 rab11fip2,LOC107585298,LOC107733785 other upstream 143716 12371999 ~ 12678159 (+)
G140693 NA other upstream 1333991 11486191 ~ 11487884 (+)
G140613 NA other upstream 1609764 11209573 ~ 11212111 (+)
G140478 nkx23,LOC106591187,LOC101065636,LOC101073339,LOC101063040,LOC104962797 other upstream 2065035 10754901 ~ 10756840 (+)
AMCG00003141 LOC105923605 other downstream 47579 12878685 ~ 12882998 (+)
AMCG00003158 NA other downstream 275350 13106456 ~ 13110634 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other downstream 893804 13724910 ~ 13743543 (+)
AMCG00003182 NA other downstream 1291677 14122783 ~ 14131275 (+)
G141331 NA other downstream 1349674 14180780 ~ 14184643 (+)

Expression


Co-expression Network