G141219 (LOC108273954,LOC108438198,LOC107550059,LOC107601819,LOC106904390)


Basic Information

Item Value
gene id G141219
gene name LOC108273954,LOC108438198,LOC107550059,LOC107601819,LOC106904390
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 13823414 ~ 13834549 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU177647
CCCAGCATCTGCAGCCTGCTCCACAGCTCCCTCTGCTGCACGAGAGAAGTCCTCCGGGTTTACCATGCCAGTCGATGCTGCCACGTTCTCCAATCCCTCCACTGTCTTCGCAGACACTTGGTTGGCACCGCTTACCGCTGTATCACCCACGATGTTGGCCTGTTCGGTGGTCTTCTGAGCCACTGTATTTACACTGTGTACGACTCCTTCCTTCGTTTTTGAACCTACATACATGACCCCTTCCTTGGTTTTCGCGGCAGCTTCCTCCACCCCTTGCTTGGTCTTCTCCGCTGCTGCCACCATCCCCTCCTTGGCCATGGAAAATCCCTTCTTCAATACATCCATTCTGGaacctggagctggagctgctgTCTCTGACTTTCGCTGctcgtgtgtgcgtgtgtgagtatgtgtgtgtgtgtgtgtctgtgcgtgcaCCAGGGAGCAGAGCAATCTCTTTCTCCaccagagaggaggaggaggagagggttGGTgtttggagggggaggggggatggaTAGACacacacacacacaca

Function

NR:

description
PREDICTED: synuclein-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU177647 True 538 lncRNA 0.55 5 13823414 13834549

Neighbor

gene id symbol gene type direction distance location
AMCG00003173 NA coding downstream 12278 13797075 ~ 13811136 (-)
AMCG00003165 NA coding downstream 418217 13396383 ~ 13405197 (-)
AMCG00003161 LOC108273829,LOC107561852 coding downstream 481649 13288224 ~ 13341765 (-)
AMCG00003159 NA coding downstream 718017 13047336 ~ 13105397 (-)
AMCG00003153 NA coding downstream 810444 13012461 ~ 13012970 (-)
AMCG00003174 gdh01,gdh3.2,glud1 coding upstream 13961 13848510 ~ 13871340 (-)
AMCG00003177 LOC106589263,LOC106579284 coding upstream 107765 13942314 ~ 13951931 (-)
AMCG00003180 NA coding upstream 130332 13964881 ~ 13994367 (-)
AMCG00003181 NA coding upstream 220352 14054901 ~ 14061129 (-)
AMCG00003187 LOC106577245,LOC105010620,LOC103366016,LOC107678534,LOC104937335 coding upstream 262241 14096790 ~ 14108291 (-)
G141175 NA non-coding downstream 262575 13560519 ~ 13560839 (-)
G140971 NA non-coding downstream 992488 12821902 ~ 12830926 (-)
G140906 NA non-coding downstream 1217462 12605752 ~ 12605952 (-)
G140904 NA non-coding downstream 1220383 12602822 ~ 12603031 (-)
G140883 NA non-coding downstream 1461210 12357446 ~ 12362204 (-)
G141221 NA non-coding upstream 8630 13843179 ~ 13843471 (-)
G141225 NA non-coding upstream 11401 13845950 ~ 13846159 (-)
G141260 NA non-coding upstream 100735 13935284 ~ 13937709 (-)
G141261 NA non-coding upstream 137218 13971767 ~ 13971966 (-)
G141304 NA non-coding upstream 228623 14063172 ~ 14063526 (-)
AMCG00003164 sec24c other downstream 393090 13407272 ~ 13430324 (-)
G141004 NA other downstream 943993 12861426 ~ 12879421 (-)
AMCG00003144 NA other downstream 968073 12851021 ~ 12855341 (-)
AMCG00003138 NA other downstream 1083607 12728238 ~ 12739807 (-)
G140757 NA other downstream 2089652 11694006 ~ 11733762 (-)
AMCG00003214 phs,pcbd1,LOC107743500,LOC107601888 other upstream 834866 14669415 ~ 14674420 (-)
AMCG00003231 NA other upstream 1222094 15056643 ~ 15140819 (-)
G141826 NA other upstream 2913512 16748061 ~ 16748431 (-)
AMCG00003320 NA other upstream 5709088 19543637 ~ 19569615 (-)
AMCG00003337 cnnm2b,borcs7,LOC107738473,LOC107708677,LOC107699104 other upstream 5967530 19802079 ~ 19876762 (-)

Expression


Co-expression Network