G141226


Basic Information

Item Value
gene id G141226
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 13847330 ~ 13849411 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU177656
TgcgttttgttgtttttatttgtttctcggacaaaaaaaaaaaaattctaacccaaaaaaaaaaaaagcattacaaatttACCAATAATCCCAAAGCAGTGTTCAGATCAAGGCTCACATGGCAAGAagaaaccagaaaaataaaataaagatttgttcCCATATGCATTCTCTCTCCAGCCTGTCTAGCTTTCCACATAAGCTGTACAGATCAAACTTTTACACAGTTAACATTCAGAACAAATGTAGCGCCCAAAGCAGTACTTATAGGTGGGGGGTTATCATTTCAGAGAAGTGCGTCTTTCAACCTGGAACTAAACACAGCATAAGTGCACCAACAGTCTACATAAAATTACAGTAAACCTGGAGGCCCCACTTGCAGATGAGGTCGTTTTAATTACTCAATTTTTAATGATGCGCCTGCAACTGCTTATAGGCGTCTGGTTTACACTAGAGTAAAGCTCTTTCCAACATTAAAAACTAAGGCatacaaagtaatacaaaacaaaagtgcactGTGTTGATAACAACTTGGCAATTTCAATTCAATCCATTATAGGGTTTGAAAAATAAGAACACTAAACCcccaaaatataatgaaaatatcaATAGCCATTAAAACCGATCAACTGTGCCAGATAGATCCAGTAATAGAAGCTCTGAgactccctctccttccctgaTCTTTACTACCTGTATCAAACGTCAGCTGACCGACGGGACACCGGTCTGCACATGTTCGACCGCGTCTCTGTCCGCTGGGCTACTTTGGTGGAGCCGAAAGCCATGTTAACCGCAAAATCTGTTTTGGTGTGAAACTTTATAAAAGCATACAATGGAGTCTGATAAGGACCTgggatggaaaataaaataaaataaatccttatgGAGGAGATACAGAaggaaatgaacaaaaaaaactaaaaaaaaataataatctagaGATTTATAAAATCACAGGTTAGCTTTGGGCTCTCTCAGAACAAAGGTTATCTGTCACAATACATCTCTAAACACGCTGgtacacaaaaaaagaaacagaagagttTTCTGATGGTTATACAGACAGCATATGGTACATAATATGTAAACGCTTGATATGTTATAAAGGCTGTATTGGGGCGGGCAGGGAATCCTCGAACTGAAGAGGCAGAGGGCAGGCAGGGCCGGACAGAGGTATCTATGTGAAAGTCAGACCGGCCTCGTTGTACACCTTGAACACTTTCTCAATGGCGTTGACATAAGCAGCGGTTCTCAGATCCAGCCCCAggttgtatttcttggcagtgcGCATGATTTGCTATTAAAAAcggagacaaaaataaatgcagaattaGCACGAGAGAATCCACGGCACTGCATAGAATACAATGAGGTGCATCGATGGAAACCACttcagacaaacaaacatcGACTGGAATACGAGACACAGCTGGTGcgccaaaacaaaataataaaagcaggaaCAACACCACTACCATGACTCATAGCAGTAGATCAAATGACATATCCATATCagagaaagggggaaaataaagtgtgtgtgcgagtgtgagcgtTGGGTAGCTAGGATTGCCAGCCACTACATCAAGACGGGAGAAACACAAAGAGATGGGGAGTCTGGGACAGCCGAGCACGACAGAGAGGGGTGGAAAAATCTGACCCCTTTTGCCCCAACCAGTCCCAACAGCCTCTGCGCAGCTGTGAACAGGTTTCCAGTGACTGACACGCACAGCTGGAATGTGTAGAATGAGCCACACATACCGACGGCAGGACTCGCACCGGCTCAGGGCGAGGGCAGAGACACCACAAGAAACACCTCCTGTACAACTTTATGATCTTAAAGCTTAGAGAGGGTGGCTTACGCACCTATTAACTTTCCATGAATGAGTAATGTCAGGATTAGACGCACACATCTTTACAGTGGGGAAAACAATCAATCCCCCTAAAATCCTACTATGTACAGGATGACATTTATGCACAACGTAAGATATAGGAACTTTTGGAACTGCTgttctgtgattggc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU177656 True 2027 lncRNA 0.42 2 13847330 13849411

Neighbor

gene id symbol gene type direction distance location
AMCG00003172 LOC106904390,LOC104951044,LOC103481534,LOC107092473,LOC108248219 coding upstream 12289 13823890 ~ 13835041 (+)
AMCG00003171 bmpr1a coding upstream 53621 13780156 ~ 13793709 (+)
AMCG00003170 ldb3b,ldb3,LOC107552745,LOC107749342,LOC108274368 coding upstream 125771 13704830 ~ 13721559 (+)
AMCG00003169 opn4a coding upstream 197570 13633428 ~ 13649760 (+)
AMCG00003166 NA coding upstream 290083 13519114 ~ 13557247 (+)
AMCG00003175 NA coding downstream 40519 13889930 ~ 13895822 (+)
AMCG00003176 NA coding downstream 65694 13915105 ~ 13937723 (+)
AMCG00003178 NA coding downstream 170934 14020345 ~ 14028256 (+)
AMCG00003179 NA coding downstream 189101 14038512 ~ 14048879 (+)
AMCG00003186 zgc:154058,LOC106579282 coding downstream 220308 14069719 ~ 14080330 (+)
G141224 NA non-coding upstream 1176 13845950 ~ 13846154 (+)
G141222 NA non-coding upstream 2378 13844746 ~ 13844952 (+)
G141220 NA non-coding upstream 3815 13843179 ~ 13843515 (+)
G141156 NA non-coding upstream 286491 13560598 ~ 13560839 (+)
G141066 NA non-coding upstream 735394 13111737 ~ 13111936 (+)
G141238 NA non-coding downstream 52364 13901775 ~ 13907086 (+)
G141245 NA non-coding downstream 100511 13949922 ~ 13950128 (+)
G141248 NA non-coding downstream 131426 13980837 ~ 13981099 (+)
G141249 NA non-coding downstream 131964 13981375 ~ 13985426 (+)
G141282 NA non-coding downstream 204058 14053469 ~ 14053682 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other upstream 103787 13724910 ~ 13743543 (+)
AMCG00003158 NA other upstream 736696 13106456 ~ 13110634 (+)
AMCG00003141 LOC105923605 other upstream 964332 12878685 ~ 12882998 (+)
G140939 NA other upstream 1107563 12730731 ~ 12739767 (+)
AMCG00003129 rab11fip2,LOC107585298,LOC107733785 other upstream 1169171 12371999 ~ 12678159 (+)
AMCG00003182 NA other downstream 273372 14122783 ~ 14131275 (+)
G141331 NA other downstream 331369 14180780 ~ 14184643 (+)
AMCG00003195 NA other downstream 434439 14283850 ~ 14299993 (+)
AMCG00003207 NA other downstream 751906 14601317 ~ 14605548 (+)
AMCG00003257 ablim1 other downstream 2614883 16464294 ~ 16500994 (+)

Expression


Co-expression Network