G141260


Basic Information

Item Value
gene id G141260
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 13935284 ~ 13937709 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU177695
taaCGCTTTATTCGGACACAATTAACATGTACACATTGACAAGGGCAGTGTTGGATTGGTTATTGTTTTCTGCATGCTTTTTCACACTCCATCCTTAagactgagaaagagagagggaaaaaaaaggatggTTTCACACACTCAAAAGACTGTCATTCTGCATTAAATAAACTGCCTGCTGGTGTCCAGCACGTGTCCCTGGATCAGCAGATGAAAGCAGTGGTGAAAGCTATTTACAAACTGCTGTCTCCTGCAGAAGAGACTCTCCTGCTGCTGCACGGAGTGGATGCCACAAACCGCATCATCCCAGGGAGGGCCGAGTCCTGTGTCCATCCTGATGCCGGCAGGCTTGTGGACTGATCCTGTAGGGTGGTTTGTTGGGGGGGTGTAGTTtgggggcagggagggaggtGAGGAGACCAACACCACTGTTGCTGCTGTGAAGAGTGTATCAGGAGTTGGCCAGAACCGGCTCCTCCTCCAtcttctcctcctgctcctctaTTGATTGGCTGCCTGACTGGAAGCCGCTGTCATTCTTCACCTCTGTGGGGGGGTAGGGGGGCAGTTAGACCACTGTGTGGACTGGCAATGCACTACACACCATAGCTGCCATGCCAACACTCGCATGGTTTATTCAtcaatttgatttattcattttctgtagaTCAGTTCCATTATTTCACAcaggcaaaataaatcagaacagtatttataatattagtaatatatGAGCTATTTGGTCAATCAGTAGTTGATGTCCTTGTGGCTCAGAGCATAGCAGGCAGGTTTATAAGCCAGAAGGACCTGTGTTCAAATCCTGATGGAGGACTGGTCTCTGGACTATGTGTtgtttgtggtgtgttttaGTGCCAGACGGGGCAATGTGAGGTTTATATACCAGAACTTTGATCAAGTTAAAGGGCAATCCTTGTGGTTTACTGCATGGAGTACTGCACTGAACTCCAGCAGaacctgggttcaaatcctacTGTGGTATTGGTCTGAAAAGTGGTTGTTTGTGGTATGTTTTAGTGCCAGagggggcagtgtgaggttgatATACCTGAACTGTGGGCATCTGAAAGGGGAGTCCTTTGTGGCTCCCTGCATGGAGTGCTAGTGTAGAAGCTAATAGGAGCTGGGTTCAAATCCAGGCTAAGGAGCATGTAAAGGGATGCAATACTAAACAGTGTTAACTGTACTATGTATAGATACCAGGAGTGTAGTTGGGTTGGTATAGAGCAGGATGAGTGGTAGAGTAAACTGCTAGGGTGGGGAAGGGTTAGAGTAGTGGGTGGAGCTGGGCTTGAGGAGAAGAGGGTGTGTTAGGCAAGAAAAGGATGAGGGATGGTGAGAACTGTAGTGAGGGAGAAGAGGACAGGTGTGCTAAATTTTTGTCCTTCCTGCTACTCCTCAAGGGCAAGTCCACCCCTCCACTGTCCTCTCCCTAGCTTAGCCCACCACTGTCCTCATCTATTCAAACCCACCTGTCTCCACATCACAGTTAACACTGGTTTTTATTATATCCCTTAATGTACTTACCTCACCAGCATGCTCCTCAGCCTGGATTTGAACTCAGATCCTTCTAATCTCCAGACCAGCACTCCATGCACTGAGCCACAAAGGACTCCCCATTTATGTGATCAAAAATCTGGTGTATCACCTTATACTAAAATAAAGTACTAGTAAATGATCAAGAGATTTTGAGAAGTGAGGTGCtgcaccaggatttgaacccaggcTCTACAACAGAATGTTTCACAATGAGCCACAAAGACCTACAGACTCACTTGAATGTTGTATatcaacctcacactgccctcAAGAGCACTCAAACAGCAGGAACAATTACAATTCATAGAAAGTGCACCTGGACTCAAACCCAGGTCTTGCCAGCTTCCAGGCAGGCACTCCATGCAGTGAGCCACACAGACATCTCCTATTAGTCACTCAAAGATCTGGTATATCACCTTCACCCTGCCCTTTCCAGCACTAAAACAAGACAAGCAACAGATCTCCAGAAGACACTGACTCCACCAAGATTCAAATGCAGGACTTGTCAGTTGCAAGACTAACACTCTGCATGGCAAGCCACAAAGGACTTCACTTAAACTTGATTGAAGAGCTGCTATATCCACTGCACAGTGAATGCGGGTTTGAGGCCAGCTGATCTAACCTGCTTCTAACAGAGATGGTGGTCATGAGGGCACGGCCACCGAATCCCAGGCTAATGTGCATGGACACACTATAAAGGTattataggtatatatattatgacttttatattattattattattattattagtagtagtagtagtccaAAAGTGTTACTTAAgggaagctgtgtaaaagccttattaaatCACCTTATAATTGATCATTCTATTTGgataccgt

Function

GO: NA

KEGG:

id description
ko04640 Hematopoietic cell lineage

RNA

RNA id representative length rna type GC content exon number start site end site
TU177695 True 2402 lncRNA 0.46 2 13935284 13937709

Neighbor

gene id symbol gene type direction distance location
AMCG00003174 gdh01,gdh3.2,glud1 coding downstream 63944 13848510 ~ 13871340 (-)
AMCG00003173 NA coding downstream 124148 13797075 ~ 13811136 (-)
AMCG00003165 NA coding downstream 530087 13396383 ~ 13405197 (-)
AMCG00003161 LOC108273829,LOC107561852 coding downstream 593519 13288224 ~ 13341765 (-)
AMCG00003159 NA coding downstream 829887 13047336 ~ 13105397 (-)
AMCG00003177 LOC106589263,LOC106579284 coding upstream 4605 13942314 ~ 13951931 (-)
AMCG00003180 NA coding upstream 27172 13964881 ~ 13994367 (-)
AMCG00003181 NA coding upstream 117192 14054901 ~ 14061129 (-)
AMCG00003187 LOC106577245,LOC105010620,LOC103366016,LOC107678534,LOC104937335 coding upstream 159081 14096790 ~ 14108291 (-)
AMCG00003188 NA coding upstream 195311 14133020 ~ 14143426 (-)
G141225 NA non-coding downstream 89125 13845950 ~ 13846159 (-)
G141221 NA non-coding downstream 91813 13843179 ~ 13843471 (-)
G141201 NA non-coding downstream 98990 13765956 ~ 13836294 (-)
G141219 LOC108273954,LOC108438198,LOC107550059,LOC107601819,LOC106904390 non-coding downstream 100735 13823414 ~ 13834549 (-)
G141175 NA non-coding downstream 374445 13560519 ~ 13560839 (-)
G141261 NA non-coding upstream 34058 13971767 ~ 13971966 (-)
G141304 NA non-coding upstream 125463 14063172 ~ 14063526 (-)
G141305 NA non-coding upstream 126091 14063800 ~ 14064171 (-)
G141319 NA non-coding upstream 187175 14124884 ~ 14131066 (-)
G141372 NA non-coding upstream 436258 14373967 ~ 14374169 (-)
AMCG00003164 sec24c other downstream 504960 13407272 ~ 13430324 (-)
G141004 NA other downstream 1055863 12861426 ~ 12879421 (-)
AMCG00003144 NA other downstream 1079943 12851021 ~ 12855341 (-)
AMCG00003138 NA other downstream 1195477 12728238 ~ 12739807 (-)
G140757 NA other downstream 2201522 11694006 ~ 11733762 (-)
AMCG00003214 phs,pcbd1,LOC107743500,LOC107601888 other upstream 731706 14669415 ~ 14674420 (-)
AMCG00003231 NA other upstream 1118934 15056643 ~ 15140819 (-)
G141826 NA other upstream 2810352 16748061 ~ 16748431 (-)
AMCG00003320 NA other upstream 5605928 19543637 ~ 19569615 (-)
AMCG00003337 cnnm2b,borcs7,LOC107738473,LOC107708677,LOC107699104 other upstream 5864370 19802079 ~ 19876762 (-)

Expression


Co-expression Network