G141517


Basic Information

Item Value
gene id G141517
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 14630412 ~ 14669084 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU178011
tttatatttaaggaCAACActtggtatttttttctttttaattagttaCACAGTAAAACAGTGGGACTGCAAACAGATCAGAACTGAAGATAAAATatacctttaaaatgtacaatttttaattcattttttataaatatctaGAGGTCCAACATCTTTATAAATGCCATGcgattctttttttcttcttctcacaAACATTTTGGAACCCAGGGCCAGAACCAGACTGGAAGTGGAATATTCAGCCAAAATGCTTATTGGACGATTTATTttgctaattattattacattttcatcagATGTAGAAAGGTTCTCTGccaacaaaataatgtttcagtaaagtgttgttttaaaaatattagtcAGGAAACTAATATCGTaagcaacataaaaaaaaaacagggtacGTCAAAACCACCAAGGAAATGGTGCCCCTGCAGGCACCTAATAGACACCTAACGTGCAGGACCCAACAATTGTTTAGACACTTGGCTGAATTAAAGCTGGTGTGTTGAGGGTTAATTATGTTGAGACACTTAAAGAAACAACGGGTCACCAAACATGTGCAGGTAAATATTGTCATGACAAATAGGAAACAAGACAACAATTGccttcaattaaatacaaacaaacatggttTATCGTCAGAAAAGTTTGAAACTGACAAacaatgtttatgtttaatacCTATTCTTAGTGCCTAGGgtgttattttcagttatttatgtatagtCCACCCAACCATATTGAATTTGGGCTTTCTACAATTCGATATAGAGTATATTCCGTTATGTCCCTTGATTTCTCTGGGAGAAACATAACTGCTTGACATACGGACTAAATGGATCAACAATCCTTTAGACAACTTCAAAATACTCCTATTAATTAGCAGTAaatattattcatttgtttgtttctactgaacatttaataaatggTGATTAACTCATTAAGACATTGTAATTTGTGTTACCACTAAAAGAAGCAAAATCATACATTAGTTCCCACACCAAATATGGTTCAGCTTAGAAGGCATACAGGTGAATGCTTCTTAATCCTCTTTGAAAGATCGtgccgtttaaaaaaaaaagtcagtgcATTTCTCCAGACAATATCTCTGGTCAAGGTGCTTTAGGAACGTTTTTAATGTAAGGGTCAGTAGACATGGTTATGAGAGTGGACTGAGGGTTGAGGAAGAGGACTGCAGAAACAAGTCTAGAATAGGCCAAGATAAAATCTGAAGCCCAACCTGCATACTTTACTCCAGAAATATTTGTAGAGATCGTTATCAGAATTCAGGGATATTTTGGGAGACGTTGCGGAACaaccatttcaattattttgtagcATAACGTTAAAGTTACACCTCATAACCAATCAAGCTGTACCCTGCATTAATGTCCATGTGACTTGAACTGTTAAAGTGATGAGAACACAgtggtatatatataacaaacaaaaaacaaattccatCTCAGTTTCTGAAGTGGTTCATTACATGATCGAAGTGGTTACAAACATTGCAAATGCTTTGAGTTTTACACAGCTGAACAAAAGGTCAAGTGTCATTAAAATGTAGATTAACATTAGTTTGCATACAATATATAGATGTAATTAACTTCTAATTAGATCTAAAATGGTGACACAGAACTCCTTTTCAACTTAAGTATTCGACTGTAGAATTTTACTACAGTGAAATATTCTGCTTAAATCACGCAGCAAAAACTAACTGAGGATAGTTCtggatattaaaatgtattatctaaGCATACAGCCTGTATGCCCCAAATCGCTGTCACTTCCACACGATgcaattatgtatttctattttaaaagttgAAGGCTTTCCCTTTTCCTTTAGCATCAGAAATATGTTCATCGCATAGAGCAGAGGTTCTCAGTCTCCACatacaatgtattaataatgaatgcGTTCCAGAGCATGAGCTTTGCCTAAGCCTACTTCACGTGTGTCACTATTGAAATGTAGCAAGACAGAGAGGTAGATGgaagtgtaaaaacaaaaaacctgggTCTTCGCACTTCCCTTGTCAAGCAGACAGATAACTGGGTGTAGAAATACTGTCACCTTCttcccgagagagagagatgccataTCAAACATGATGCACTACTACTATTCTCagtcaaacaaagaaaagtggGTCAAAGTCCAAAAGGTTAGTGATCTTGCCCATCCCTCTGAAAGTCACCTAGCTTGTCTGGAATGTACagcacatgaataaataaataaataaaaatcgaTGCAGACCTGTAGTACTGAGCCTATTGTCAAATATAACACTGCTGGCAGCCAGGAAATTTGGAGAGAGGAAAcagtatctatctatctatatctatctctaTGAATCAGGTTTGATTCCATTGGGAACCAACACTACAGTAAGTTTCACAGTATCTTCATTTTTCATGACTGCAGGATTGCAGAATACCTTTACAACAGTATTCAAAGTAGGAAAGTCAACCTAATGCAgtcatatattgttttacttgTCCTATTAGAATGAGAAAGCTAAGATTAAAATTTAGCATGGTTGTATGTTTTTAGAAATTATACTATCTTAGAACAAACAGAATCTTCCAACATAAAGAAGTCCTTTGTGTTGTATTATAACCTAGATTTTATTAAccgttttctttatttttttttaaatatataaggtATTTGTTGAAAATTCTATTGATTATCTTTCTATTTCAATGCAGCCATGAAGTGATTAAGCAAGGTGcacattttccaaaaaatatgaaatacaaatcatCTGTATGGACAAGAAGGTTTAGCATTTCCTACCTGTGCTCAAACAAAAGCTCTAACAAATAGTGTGACAGTCATGGTTTTACAGAAATGGCATGATCCATTTGAAAAGCCCATCTTCTACATATGTGACAAAGATTATTGGTATGCtaaaaacactgattttcaagaaacattttaagtgttgataaaaaaaaaacacaattgtggAAGTTAACTTAGCTTTAAAAGTCTTACTgaagattaatttatataattcagTATTTATGTACTTTCACCTTCCGGCAGACAGTTTCATCACACCCTAAAGGTGGAGACAGATTAAAGGAATCGAATGTGCTCAGAGGAATGAATATATTGTGGAGTGTGTTCATGATTtgtcaaattacaaaaaaatataatggatCTGAGCATTTTCAAAGCAGGTTTTTGGTGtcaccttttgtttttcaaaactaagctgtataaaaaaaatatatatattctattctaTAACAGTTaccaattaattttaatttccaaaattaaaaaacgaCACTTGCCTTTTCCGTACACAGGTTAATGATTATGTCACAGGAATGAGAAAAGGGTTCGCCTATCTGGACTTAATATCTACTGCATGTACAACAAAACACAggggaagaacaaaaaaaaaaaaaacaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU178011 True 3460 lncRNA 0.34 2 14630412 14669084

Neighbor

gene id symbol gene type direction distance location
AMCG00003204 pprc1,LOC107585240 coding downstream 98780 14516169 ~ 14531632 (-)
AMCG00003206 mgea5,LOC107666422,LOC107667060,LOC107585241 coding downstream 117607 14499293 ~ 14512805 (-)
AMCG00003205 NA coding downstream 134370 14490784 ~ 14496042 (-)
AMCG00003200 arl3,LOC102201386,LOC102778022,LOC108263849,LOC106589841 coding downstream 150476 14472344 ~ 14479936 (-)
AMCG00003201 actr1,LOC103036907,LOC105889177,LOC106585571,LOC108425179,LOC107602067,LOC106579867 coding downstream 218486 14405461 ~ 14411926 (-)
AMCG00003215 NA coding upstream 7623 14676707 ~ 14773565 (-)
AMCG00003220 NA coding upstream 163595 14832679 ~ 14849623 (-)
AMCG00003219 NA coding upstream 187006 14856090 ~ 14878016 (-)
AMCG00003222 inpp5f coding upstream 219098 14888182 ~ 14915336 (-)
AMCG00003223 NA coding upstream 294235 14963319 ~ 14973599 (-)
G141402 LOC105911637,LOC108421648,LOC103034952,LOC107581594,LOC107722222,LOC107690907 non-coding downstream 183907 14443831 ~ 14446505 (-)
G141374 NA non-coding downstream 252099 14377649 ~ 14378313 (-)
G141372 NA non-coding downstream 256243 14373967 ~ 14374169 (-)
G141319 NA non-coding downstream 499346 14124884 ~ 14131066 (-)
G141305 NA non-coding downstream 566241 14063800 ~ 14064171 (-)
G141569 NA non-coding upstream 484932 15154016 ~ 15154370 (-)
G141571 NA non-coding upstream 494870 15163954 ~ 15172448 (-)
G141583 NA non-coding upstream 548390 15217474 ~ 15217807 (-)
G141681 NA non-coding upstream 1319851 15988935 ~ 15992678 (-)
G141704 atrnl1b,atrnl1,LOC107755548,LOC107566689,LOC107702414 non-coding upstream 1338979 16008063 ~ 16061038 (-)
AMCG00003164 sec24c other downstream 1200088 13407272 ~ 13430324 (-)
G141004 NA other downstream 1750991 12861426 ~ 12879421 (-)
AMCG00003144 NA other downstream 1775071 12851021 ~ 12855341 (-)
AMCG00003138 NA other downstream 1890605 12728238 ~ 12739807 (-)
G140757 NA other downstream 2896650 11694006 ~ 11733762 (-)
AMCG00003214 phs,pcbd1,LOC107743500,LOC107601888 other upstream 331 14669415 ~ 14674420 (-)
AMCG00003231 NA other upstream 387559 15056643 ~ 15140819 (-)
G141826 NA other upstream 2078977 16748061 ~ 16748431 (-)
AMCG00003320 NA other upstream 4874553 19543637 ~ 19569615 (-)
AMCG00003337 cnnm2b,borcs7,LOC107738473,LOC107708677,LOC107699104 other upstream 5132995 19802079 ~ 19876762 (-)

Expression


Co-expression Network