G141573


Basic Information

Item Value
gene id G141573
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 15186071 ~ 15186325 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU178084
CTTGCCCTCCCTCTGTGAGctaatgtttacatttgtggtgtgaagactctgtataggaagttgaagaaagtgttttgtgataattatttaatgttttgtattggtaCTAGCATTGGTACCAGATtcgatttagcaggacaagtaaagggtcaacaaggtcgatttgttagaaactcccgtcagtaatgaaagattatgCAGTGCCGAAATaccctacagatgtctgctgtgcaTTTGTTTATGGCTTAATCGTTT

Function

GO:

id name namespace
GO:0006401 RNA catabolic process biological_process
GO:0006402 mRNA catabolic process biological_process
GO:0000956 nuclear-transcribed mRNA catabolic process biological_process
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0044448 obsolete cell cortex part cellular_component
GO:0032156 septin cytoskeleton cellular_component
GO:0031105 septin complex cellular_component
GO:0005938 cell cortex cellular_component
GO:0099568 cytoplasmic region cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU178084 True 255 lncRNA 0.38 1 15186071 15186325

Neighbor

gene id symbol gene type direction distance location
AMCG00003238 LOC107736286 coding upstream 7856 15174130 ~ 15178215 (+)
AMCG00003234 NA coding upstream 18097 15163724 ~ 15167974 (+)
AMCG00003242 NA coding upstream 24533 15157133 ~ 15161538 (+)
AMCG00003229 NA coding upstream 39786 15135212 ~ 15146285 (+)
AMCG00003230 NA coding upstream 129845 15052342 ~ 15056226 (+)
AMCG00003233 NA coding downstream 18302 15204627 ~ 15216414 (+)
AMCG00003236 NA coding downstream 54176 15240501 ~ 15250404 (+)
AMCG00003237 mxtx1,LOC107666529,LOC108415850 coding downstream 79796 15266121 ~ 15267591 (+)
AMCG00003235 bms1,LOC107566656,LOC107675025,LOC106605356,LOC106581260 coding downstream 81896 15268221 ~ 15284542 (+)
AMCG00003243 tspan14,tsn14,LOC106577130,LOC107743579 coding downstream 102299 15288624 ~ 15301140 (+)
G141405 NA non-coding upstream 669561 14462167 ~ 14516510 (+)
G141412 mgea5,LOC106961065,LOC107569412 non-coding upstream 677232 14500971 ~ 14508839 (+)
G141401 NA non-coding upstream 740716 14443857 ~ 14445355 (+)
G141282 NA non-coding upstream 1132389 14053469 ~ 14053682 (+)
G141249 NA non-coding upstream 1200645 13981375 ~ 13985426 (+)
G141574 NA non-coding downstream 3658 15189983 ~ 15190345 (+)
G141582 NA non-coding downstream 30917 15217242 ~ 15217551 (+)
G141592 NA non-coding downstream 66515 15252840 ~ 15254844 (+)
G141829 NA non-coding downstream 1612634 16798959 ~ 16801312 (+)
G141885 NA non-coding downstream 1846100 17032425 ~ 17035242 (+)
AMCG00003207 NA other upstream 580523 14601317 ~ 14605548 (+)
AMCG00003195 NA other upstream 886078 14283850 ~ 14299993 (+)
G141331 NA other upstream 1001428 14180780 ~ 14184643 (+)
AMCG00003182 NA other upstream 1054796 14122783 ~ 14131275 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other upstream 1442528 13724910 ~ 13743543 (+)
AMCG00003257 ablim1 other downstream 1277969 16464294 ~ 16500994 (+)
AMCG00003256 NA other downstream 1340864 16527189 ~ 16559206 (+)
G141962 NA other downstream 2489954 17676279 ~ 17678522 (+)
AMCG00003291 bbip1 other downstream 2534919 17721244 ~ 17725381 (+)
G142078 NA other downstream 3402249 18588574 ~ 18692204 (+)

Expression


Co-expression Network