G141592


Basic Information

Item Value
gene id G141592
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 15252840 ~ 15254844 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU178111
CACAGAAGTAAATAGGAGCATGCCGAGACTGTCAATCActctttatttcagaaaatgaattGCCATAAAAATCAGCAAAACACTAAACCTTCAGCTGTGTTTCCACTGGCCTGCAACTGTGTCCCCATGAGAGTGAGGTAGGTGTCCTAGCTTGAAGAAGCTTAACTCTGTGTGTAACACCTCCTGTTGTTAAAGCAAGTCTTCTAGACAATTAAAACAAGACTATGATTAATGTGCTTCTCTTAAGCATTAATTAAGTAACCGTTTCAGTTTGTAGACAGCTAGAAGGCAGGTAGATAAACAAGATgttaataacACTAAAATAAGTTTGTCCTGTTTTCTGGCCCAGAATGCATGTGTGCTGAGGGTGTATTGCCGTACAGCAGGACATGGATAGTATAGCTTTAGCTGGTCTACAGTACAAATAAAGAGAAGTCAATGGTCCAAGGAATGTGCTCCACAGTCCCCAAGCCCCTGACGGAAAAGCAGCTGCTACCCAGGGCAGACCAAAAGCAGAGTCATATTTCTTCAAGTAGTGGTGCAGTTCAGTGTTGTGTTCTGCTTCCCCGTGTTTCTTCTTAAGTGTCCAAATGATAAGCAAACTAGAAATGCACGAGCCCTGTTGACCTCGGGAATGTGCAACTGCTGTGTTGCCACTTGAGGGGTTGTGGCAAATAATAACCATCCAAAGCATTGTAAGTGACAGGGATGTTTCTGAAAGTATATCACTGTTTTGCAGAACTGTGACTTGCTCTTCCCCCACCAAAAAACgggctaaatatttaatttcccatCTCATTCCTGGTTGGTTTCCTGGCCCCATGTTGCCTACACCACTTTGCTGAGGGGGAGGAGGTGTTAGAAAGATGGACAAAGCGATCCCTCTCCATATTTACTCACTTTCCTCTTATCGAAAGCTGCCCCCAAGTTGAAAGAGGCTGGAAGTGACAGCCTCCGAGGACTTgtcgagagagagcgagagacactGTCTTATTGTGAGTAAATTGTTCCGAAATGATGCCTCCACACAAGGGGAGAAGGGTGGATTGGAATgtcttattaattaaaaaaaagttagttaAATTGTCAGACCTACAGCCTCTACATGTGGCAGGCACCCCCATTTAAGAAATCCTGATATACAAAATCTGTCTTGTCTCACACCCATGCCCCCTGGTTTAATACCCCTGCTCTAATCAAATTATTGTTAATCTGGTTTGTGATTCCTGATGGTCCTcttttattcttaaaaacatCTCATATTAAGAACATTAGTTGATCCCCCCATTTCTATATAGGAAATATATGAGATAACCTTTTCTTGTCTCCACTCTCCCCACCTCTGTATTTAATCTACTGTCTCGCTCTGCATTGTACCGGATCTCCCAGATACTGTCTGAAAAAGGGAGTATTATAAACTCACAAATAGCTGTACTGAAATGGGCCAAACACAGTGTACTCGTCcagtttctctctcacacatctATGCCTCTTTTGTATATAGATGAACCCACTGGCATGAGCCTGTGTGTTAAAGGCCCCAACATGACCCACCAGCCAGGCCACCAGATGCTGCTGGCTTTTGCTTCCTGTGGTGCTCTATATCGTGTCACATTTGAGTACAGCTCTGTCAGCACAATACGTGGTCACAGCTCCACAGTGGGATGTAGCTAGACAGAGACCGAAATAGCAGTGAGGGAGGTCTGTGCAGGAGGTTGTGTAGTGTGAGGTAATGGggtcggggtgggggggcatctCGAGGTCCGCTCAGTGACGTTTGGGTCGGGGGTCGGGCTTGTACTTCAGCAGcagggacagagagaaataCCCAAACAGGAAGGTCTGGAAGCACCACAGGAACCGGGCCACCACACTGTCAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU178111 True 1881 lncRNA 0.45 2 15252840 15254844

Neighbor

gene id symbol gene type direction distance location
AMCG00003236 NA coding upstream 2436 15240501 ~ 15250404 (+)
AMCG00003233 NA coding upstream 36426 15204627 ~ 15216414 (+)
AMCG00003238 LOC107736286 coding upstream 74625 15174130 ~ 15178215 (+)
AMCG00003234 NA coding upstream 84866 15163724 ~ 15167974 (+)
AMCG00003242 NA coding upstream 91302 15157133 ~ 15161538 (+)
AMCG00003237 mxtx1,LOC107666529,LOC108415850 coding downstream 11277 15266121 ~ 15267591 (+)
AMCG00003235 bms1,LOC107566656,LOC107675025,LOC106605356,LOC106581260 coding downstream 13377 15268221 ~ 15284542 (+)
AMCG00003243 tspan14,tsn14,LOC106577130,LOC107743579 coding downstream 33780 15288624 ~ 15301140 (+)
AMCG00003247 NA coding downstream 632272 15887116 ~ 15891866 (+)
AMCG00003248 gfra1a,LOC107754853,LOC107557962,LOC103356746,LOC107711414 coding downstream 672924 15927768 ~ 15931031 (+)
G141582 NA non-coding upstream 35289 15217242 ~ 15217551 (+)
G141574 NA non-coding upstream 62495 15189983 ~ 15190345 (+)
G141573 NA non-coding upstream 66515 15186071 ~ 15186325 (+)
G141405 NA non-coding upstream 736330 14462167 ~ 14516510 (+)
G141412 mgea5,LOC106961065,LOC107569412 non-coding upstream 744001 14500971 ~ 14508839 (+)
G141829 NA non-coding downstream 1544115 16798959 ~ 16801312 (+)
G141885 NA non-coding downstream 1777581 17032425 ~ 17035242 (+)
G141955 NA non-coding downstream 2262876 17517720 ~ 17517921 (+)
G141965 NA non-coding downstream 2448328 17703172 ~ 17703460 (+)
G141966 NA non-coding downstream 2457816 17712660 ~ 17712864 (+)
AMCG00003207 NA other upstream 647292 14601317 ~ 14605548 (+)
AMCG00003195 NA other upstream 952847 14283850 ~ 14299993 (+)
G141331 NA other upstream 1068197 14180780 ~ 14184643 (+)
AMCG00003182 NA other upstream 1121565 14122783 ~ 14131275 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other upstream 1509297 13724910 ~ 13743543 (+)
AMCG00003257 ablim1 other downstream 1209450 16464294 ~ 16500994 (+)
AMCG00003256 NA other downstream 1272345 16527189 ~ 16559206 (+)
G141962 NA other downstream 2421435 17676279 ~ 17678522 (+)
AMCG00003291 bbip1 other downstream 2466400 17721244 ~ 17725381 (+)
G142078 NA other downstream 3333730 18588574 ~ 18692204 (+)

Expression


Co-expression Network