G141681


Basic Information

Item Value
gene id G141681
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 15988935 ~ 15992678 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU178210
taattttgcatgtgttttgaaatgtgtgttgcaAATCTGTTCTAGTTGTTTGCTAATGTGGGGTCCTAACAGGCCGGTACGGTAATCTGTTTTTCATGGGCTCATTCAAGAGCACTTTCTTGGGTGAAAAATAAGACACTCTGCTGGAgtcaacatttttaatgatcTTTTTTGTAGAATAGGTTGTACATTTTCACAAGCTAAGTAGTAACGTGGTGTATAGCTGAAGGATCTTTTATAAGtataaattttttttttttttttttttttttacaaccaaAGTAGTATGGATTGGATGattacaaataatgaatgtgtcATTACACTGCGTTTTGTGATTGCATGTTCCCAAACCCAGCCTCCTTGCAGCACATTCTGGTGTCTCAGACTGTCATTCCTGTCAGAGCATTCAACAGAGACGATCCAAATCCCAGTCCTAAACAGACTGCTTCTGCTCCCGTGAATAGGACAATTGGTACAATTTGCGTGGCTGTCTGCTAACGAGCCCCTTCTAAATCGtcaattaaatactttcagatTCCAACAGAATAAACcagaattaattacattaattgtcATCCATGCgaggtttatttgtattgtatttattaatatttcattcattcacttcTGTGCTGCATGTTTGCGTGGGAGGAAGTAATCAAAGAGGAAAATTACACTGATGtcaacagaaatacaattagaaaaataaaataagtgtttaccataaaacaatgttatattcTGGCCACAGCTGAAATACTGTAAGATACTTTTCTTAAGATAGGTCAACTGtgacaataatagtaataaaaaaagtcTTCTGTAAGTTATCTGGTTTATACTTTTCACTTCAGTCTGAAAACTTACATATGACTCtggagaaaaatataatgtggtATATCAGCGAAAGAAAACACATTCTCCAATGTGTTGAAAGCGACACTGTCAACAGTTTTTACATCTTTGAAAGAAAGCGTATAGTCCCATTTACTGAATTCCATCATTATTAGTGGCTTTAACAATGATGTTTTCTTGTCTTGAGTTTGGTACATTAGTATATTATAGTGGCTTGTGATCCAAACATGTTATCCTGGAAcgtggcatatatatatatatatatatatatatatatatatacacacacacatgcatacatatatgtatgtatttgtttccgTAAAGCCTGAAAAACTAAAGCACCACAGTACAAACGACAGTAAACTATGTGCATTGCATTGTAGGAGTCACCTTTCCGCACAAGcttatatataaaatcccttTGTTTGCGATTAATTTTATTCTCTGTAAATCATCGGTTTTGGATCAAATgttcttaattgattaatggTAAATTCTCATGtgattaattacaattacttaAACACCCCCACCTCTTTCTGTCAATAGACATGAGTGTCATATGATGTTCACTACGGTTGCgaaggtgattttttttcttagcagCACTTTTACGAAATTACAAAAACTCACACAAGAATTATAGTTGATTCTTTGATCCCCAGCGTAGCTTGACACGGTTCTGCTTTACagaccaaaaacaacaaaacacaagtgACAGTTTCCTTTACACATTGTAAATGTAATCTGGCATTAAATAGAGCAGTTGAATTAGCAGTCTGGCTGTATTTTGTGATTATGTGCAGTTAGAGAAACACTTATATAAAGTGGCCATTATATTAATCCATGTCTGATTGAATCAGATATGCGATTGAATGTTCTCTGAAACTGTTACAGCAcagcacttactgtactttttcAAGCAGACATTGCCAGCACTTTTTAACTTCAGTTCAATCTGCAGATAACATACTATCATTAAAAAATTccctttaatttccttttttgaaCTGTAACAGTATGCGTGCCACTTTTAATAACACTGAGCagattataatacattaaatgcatgaCCATTACAGCCAATTATCATGATCTGCCATCTGATTAGGAATGGGCTGACTACAAAGAGAAAAGGattaaaatccaaataaaataaccaaaaaaaaaagtaacttcGGAACATCCTTGTTATGAGGAGCTATTTTACACAACTTTGAATTTTAAGTTTTACATACACAGGTGGTTAGTGCGACTGCAAGTATAAAGGCTTGCTAAATTGAAgcttattgtaaaaaaataaaataaaacctttcaactGCAATGTGCACTCTTGTTGTGGTCATCAAAAATGGAGGAGAAATACAAGCCGGATCAGCAGATGTATAAGACAGAAAGGGCACCTGCAGCAGAAGGAAAACCACGTACGAGAACAAGAACAGTGAGCGAACACCAGTACAggtaaaaggttttttttttccttttaagcaTCTGTAACAATCCATCCAGTACAAAAAGGGTAAAGCCTCAGGAAGTCTCCTCTCTGTGGCTCCAGCCCGTCTGCACCCTGCTTGGGCCTCAAGTTGTCCCAGCAACCCCGGCACGAACGTCCGTCCCTCGTCAGTTTCGGAAAATAGACATTTTACATATGCACACCACAAACAAGATTCTCAACAAGAAAATGTCGCCTCCTTCCCGCACAGGGATTTAAACCAAGATACTGTACAATAATGATGAaaacctccctctccctccctccctccccattaTCTCCCCTTTTGTTTTGAAgtattttctctttcctctgAAAAACTCCAAATGCCCACAAGCCATTTCGGTCTGGAATGTAGCACTGCATCGCCCCTAAACAACACAAGAAGcttcctttaaaaaagaaaagcataacaaaaaaaaatccagttacAAAGAAATCACTTCAAAATGGAGCCTCAACAATGCCTCTAGAAccagaattaaagaaaaacaaaatacagcagaagACTGGGaacatattcttattttttcttttttttttcttttttttttacaagtcCGGTTGCGTGTTTGGCTACAATTTTTCAGAGGGGTTGAGAGCCAGGACGGTTGAGCAGACCACTGAAACCAGAGTGAGGACCAAGCTGCTGGGAGGGGAAGCTGTCGGCGTGCTGGATGAGGGCTTGGAAATGGCATTTGTATTTGGGTCGTCAATTTGAGGATCCTGCGAAGAtttcaagaaattaaaatAACACGAACAGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU178210 True 3118 lncRNA 0.37 2 15988935 15992678

Neighbor

gene id symbol gene type direction distance location
AMCG00003252 NA coding downstream 71388 15900357 ~ 15917547 (-)
AMCG00003246 NA coding downstream 415448 15564828 ~ 15573487 (-)
AMCG00003245 NA coding downstream 512537 15446986 ~ 15476398 (-)
AMCG00003244 NA coding downstream 673465 15304800 ~ 15315470 (-)
AMCG00003239 NA coding downstream 729561 15252869 ~ 15259374 (-)
AMCG00003251 NA coding upstream 218763 16211441 ~ 16220263 (-)
AMCG00003250 LOC107689951 coding upstream 244734 16237412 ~ 16267392 (-)
AMCG00003254 LOC106590870,LOC107580847 coding upstream 339129 16331807 ~ 16341749 (-)
AMCG00003255 NA coding upstream 354746 16347424 ~ 16365986 (-)
AMCG00003274 NA coding upstream 574093 16566771 ~ 16590833 (-)
G141583 NA non-coding downstream 771128 15217474 ~ 15217807 (-)
G141571 NA non-coding downstream 816487 15163954 ~ 15172448 (-)
G141569 NA non-coding downstream 834565 15154016 ~ 15154370 (-)
G141517 NA non-coding downstream 1319851 14630412 ~ 14669084 (-)
G141520 NA non-coding downstream 1328944 14659419 ~ 14659991 (-)
G141704 atrnl1b,atrnl1,LOC107755548,LOC107566689,LOC107702414 non-coding upstream 15385 16008063 ~ 16061038 (-)
G141740 NA non-coding upstream 502160 16494838 ~ 16498441 (-)
G141795 NA non-coding upstream 661013 16653691 ~ 16656167 (-)
G141871 aldh18a1,LOC107684039 non-coding upstream 922260 16914938 ~ 16919500 (-)
G141879 LOC107575789 non-coding upstream 944956 16937634 ~ 16938046 (-)
AMCG00003231 NA other downstream 848116 15056643 ~ 15140819 (-)
AMCG00003214 phs,pcbd1,LOC107743500,LOC107601888 other downstream 1314515 14669415 ~ 14674420 (-)
AMCG00003164 sec24c other downstream 2558611 13407272 ~ 13430324 (-)
G141004 NA other downstream 3109514 12861426 ~ 12879421 (-)
AMCG00003144 NA other downstream 3133594 12851021 ~ 12855341 (-)
G141826 NA other upstream 755383 16748061 ~ 16748431 (-)
AMCG00003320 NA other upstream 3550959 19543637 ~ 19569615 (-)
AMCG00003337 cnnm2b,borcs7,LOC107738473,LOC107708677,LOC107699104 other upstream 3809401 19802079 ~ 19876762 (-)

Expression


Co-expression Network