G141704 (atrnl1b,atrnl1,LOC107755548,LOC107566689,LOC107702414)


Basic Information

Item Value
gene id G141704
gene name atrnl1b,atrnl1,LOC107755548,LOC107566689,LOC107702414
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 16008063 ~ 16061038 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU178234
AGCAACTCatgagagagaggcagcagaTGGCCAGCCGTCCTTTTGCTTCTGTTGACGTGGCGCTCGAAGTAGGAGGCGAACAAACAGACCTTCTTCAGGGGCCACTAGAGGGAGCCCCGAAACCAATCGCTGTGGAACCGTGCTCAGGGAACAAAGCGGCAGTGCTGACCGTCTTCATGTGTCTCCCCAGGGGGCCATCTGGTGTCCCCCCCCCAGGCCAGTCTGGTATAGCTATTGCCAGTGCCCTCATAGATACCTCCCAGCAGAAGCTCACAGAGTGCAAGGAGAAGAGCTTGGGTCTAAAGAACCGGAAACAGCACCCCCCGGCCCACCAAGGGACTTGCGTTTGAGCCGGGAGCCGCGGGGCGCACTTGTACATTCTGtgacttgttttcttttatatggcttttggacaagagaaacaaacaccaacaaaaaaagtcaTACCACCGCCTCCGTTTCGAAAGAGGCCAGTAAGGAATTTCTGTTAGGTAATGACGTGCCCTTTGTTCTTTCCATGTGTCGACTCAAGAGTAGTGTTCAGGAAAACACGAGgccccaccctcctcctcctcaccttgaAGGCTGCCAACTGCAGACGCTCGAAGTGGACCGGATAACGGCGAACCCACGGACAGACCTGCACGGATCTGCGCTATCTgatgtaacaacaacaactacgCATAGAATAGCAGATTTCCTTGTCGCGTTATGAATCTGAAACCAGCGAAAGGGGGACCTGGCTAGTTTGGGGTTTGGTTGTTTACTTTTGCAGAACGGAAATAGGCTTTGAGTTTTCATGATTAAGGGAAAATGAATATgagatgcacatttttttttattttttttttatttgtcatttttagaAGAAGCAAGGAGGGAACACTATTTTAATACTCGGTAACtcaagaaagtgttttttttttttttttctcagtgtaTTGGAGGTCATTTGTATAAACAGGCAGAGTAAATTGCCCTTCAGTTTAAATTAGCTCACGTTGTCCATCTCTCTGATAATGGTTCTGCTTGCTTTGTCCCTGTGTACGTTGTGAATGTCAGGGTAGGGAGCCAGGACAGAGGTTTCCGAGACCAGTGTATTGAAATGCTTTGTCCTCCAAGATAGAGACCAGGCCCCCGACTCTTATACCTCTCTCAGTGGTGCAGAAAGTCCTCTCGCTGATGACAGGCATTTCGAATCACTTCGCTACGCAGCGTTCGAAAGGTACATAAGTAGAAGGTTGCTTTTCTATTATAGACCATCTGTTTCATTCATTACGTTTTCACATCATTAACTGTATTTGTAAAAGGTggcaatggaaaaaaacaacaacaacgtttTAAGAAGAACTAGCATCTGTGTCGCAGTCTCGATTACCAGGGTGTCAGCTGAGGTTGCTTTAGTTGCCGTCGGAGAGAAACGGGCGCCATACCTTAGCAACTGAATGGCGCCATGGATGCTGCAGGACATTGCGGCTCACATGAACACTGTGGCCCTTCGGTGCCCGTGCAGGGGGTTTAAAGTAATGTGAACtacatggaaaaacaacaattcactctgcatttttttttatgtgtgtgtttgttttaaactcaGAAAGGTGTTATGCTATTTGTGATGGTTTACAATGGCATTTTGAATGCATGCCTCAGTGGTTTCATATCTGTGATGATAAACCATATGTcctttattcatattatttttatttttatgagaagaaaacaatgaattaaataaaagtttctTATTCTTCAGTACATATCAAACATTGTCAGTGTATCTTAGGGTTGTGGTACAGCTTATAATAAAATCTGCTCTCCTTTGTTGCTCTTGCCTtcgaaatcttttttttttttcctgtccaGATATTGCAGCAGGAGCTCAGATTAAGTAAATGGTACAGATTATTTGAtatggtcattttttttttcaaatgccttGTTGACATAAATGGATTTCCGTTCATCACATACGTATTCGGACAACCCGTTATATAACAGACACAACGTTTAACTCCAAACCTTCTGCTGCTACTATGTGCGGAGAATCTATagtgtcagacacacacacacaagtcaaaTTGCATGggtctgtttgtgtgtaaaccGCAGTAAGAGAGCTCTGTACTTTGTGTTCATAATGCTAATTATGAAATACGCACTTGGTTATAATATTTCTCCAACATCTTTTCCCACTATAGCAGAAACTGTCCTCCCACTTCAATTCACAGCCATTCTCACTTAGAAAAACAAAGGCATCTTTAAGGAAACTCTGCTCTGGTTGGTGAAACGCATATGAAACACatgaattaaacacatttttaaactatCTATTGACTCTAATAGTGCAACATGAGGATGTTAggtattgtaaaaaatatatatagaaataaaatcaggttgttttatttaatttttataccACAGTCTTCTAATAAACTTTATATTAATCTGCTCAAACACTTGAATATGTGCAAGTATTCACAGTCTTAGGCAGGTAATGGTTGTaggcattaaaacaataacttcataacattaaaaaaatgtgcacagCTTTATATTTGCACCCCTGTGTAGGTAAATATTGTATTGACCCATCTGAAACAAACTGCAACATAAAAGGTACTTCTTAAGGTTAAACAAATGGAGGAAggaaaatctataaaaacacagaaaatattcCAGTACAGGGATATTATGGTCTCTGAATCTGTGACAGTTGTCCAGGTAGTGtcgtctttattttattttgcttgtttgattagtttttctctctctcacctcctgAATATTATATCTCAGCTAATATATTGGGAGTCACTACCCAATAACATAAGGGTGAGCGATGATGAGAAACCGAGAATAGGCATACCACAAATTTCACACACGAATCCCACTTTGATCAACAGTACTAAActtatgttgtgttttcttaGTTATAAtacatcagtaaataaataatgtgcacATAACAGCAAGTCGTTTGAGTTTTAGTTTCACTTCTATTAAATGCAATTTGACCCCTATTCATCAGTTCTAGATTAACAAAACGAACAACTGTATAATAGTACTGTATCCCAGGAAGCTTGTGTGTGCTCTAAATCTTCACTGCAACACATGGGTATTTTGTGTCTTAGTTATAGCTAAACAAAGTCGACCAATTTTGTTTAAGGGTAGACTGATATACATGGCAAAGCCCAACCTTGGGACGTCAGCTACACAACTGTTATTATGGATTCgcatttgaaaacataattgGCACGTATCGGGACTGCCAGCCGTGCTCAGTACTGCCAGCTGCCCAGACAACTTCACAACTTTCACACTCTGTGCTTTCGCTGTAACTATTGTATTTTGTAGCTGTTGATGAATAAACACCTCTTCCTTTATTCACTGCATGTCAACAGCTAGATTGATCAGTGAACCTCCAGTATTTtattggaatattttttttaagtttacatTATCATTCTttactttctttatatttaggcattaaagtttttcttttctttttgagcGGTACTTTGTCAAATCCAAGGGCCAAAAGTTCTTATATAAGCTACATTTATTCAGAGAATCATGCTCCTTATTGATCTTCAAGCTATTCTAAGGTCACTGACTGATCTTCAGTTGCATTACAAATATCAGTCTCATTATCATCTCGGTAGGCGTTTCCCACctgtatataaacaaagtgtttttgttgtttttctcttatgTAAAATTTGGCATTCTGTTGCACTGATCAATGACATTTCAAGAGTTTAGCGTGTAAAATTTATACCACTTTGAAGTCTTGTATATGGaggaatgttttgtttgtgcatttactttttttttttttttggctgtttTTAGTGTTTCTGTTAAGTTCTgttctctttattttcctttttattttgtcttgagAATTAACTTGTAAAACGGACACActtgtatatgtacatataaatatataaatatatgaaatctGGCTTTTTGTCAGGTGAATTCCACAAACTGAagtattttacacaaaaaaacaaaatcaaacaaaaaatgttcaaGTTTGTATCAATAAAGAGCAGCTCAcatcatttatttgttcatatGGGCATATGTAAagttcataatttaaaaataaggaaaaaaaaatgttttgaagctTCTACATAATAAAGAGAAACC

Function

symbol description
atrnl1b Predicted to be involved in several processes, including animal organ morphogenesis; cell migration; and substrate adhesion-dependent cell spreading. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in basement membrane. Orthologous to human ATRNL1 (attractin like 1).
atrnl1 Predicted to enable carbohydrate binding activity. Predicted to be involved in several processes, including animal organ morphogenesis; cell migration; and substrate adhesion-dependent cell spreading. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in basement membrane.

NR:

description
attractin-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU178234 True 4170 lncRNA 0.38 3 16008063 16061038

Neighbor

gene id symbol gene type direction distance location
AMCG00003252 NA coding downstream 90516 15900357 ~ 15917547 (-)
AMCG00003246 NA coding downstream 434576 15564828 ~ 15573487 (-)
AMCG00003245 NA coding downstream 531665 15446986 ~ 15476398 (-)
AMCG00003244 NA coding downstream 692593 15304800 ~ 15315470 (-)
AMCG00003239 NA coding downstream 748689 15252869 ~ 15259374 (-)
AMCG00003251 NA coding upstream 150403 16211441 ~ 16220263 (-)
AMCG00003250 LOC107689951 coding upstream 176374 16237412 ~ 16267392 (-)
AMCG00003254 LOC106590870,LOC107580847 coding upstream 270769 16331807 ~ 16341749 (-)
AMCG00003255 NA coding upstream 286386 16347424 ~ 16365986 (-)
AMCG00003274 NA coding upstream 505733 16566771 ~ 16590833 (-)
G141681 NA non-coding downstream 15385 15988935 ~ 15992678 (-)
G141583 NA non-coding downstream 790256 15217474 ~ 15217807 (-)
G141571 NA non-coding downstream 835615 15163954 ~ 15172448 (-)
G141569 NA non-coding downstream 853693 15154016 ~ 15154370 (-)
G141517 NA non-coding downstream 1338979 14630412 ~ 14669084 (-)
G141740 NA non-coding upstream 433800 16494838 ~ 16498441 (-)
G141795 NA non-coding upstream 592653 16653691 ~ 16656167 (-)
G141871 aldh18a1,LOC107684039 non-coding upstream 853900 16914938 ~ 16919500 (-)
G141879 LOC107575789 non-coding upstream 876596 16937634 ~ 16938046 (-)
G142060 NA non-coding upstream 2225965 18287003 ~ 18287212 (-)
AMCG00003231 NA other downstream 867244 15056643 ~ 15140819 (-)
AMCG00003214 phs,pcbd1,LOC107743500,LOC107601888 other downstream 1333643 14669415 ~ 14674420 (-)
AMCG00003164 sec24c other downstream 2577739 13407272 ~ 13430324 (-)
G141004 NA other downstream 3128642 12861426 ~ 12879421 (-)
AMCG00003144 NA other downstream 3152722 12851021 ~ 12855341 (-)
G141826 NA other upstream 687023 16748061 ~ 16748431 (-)
AMCG00003320 NA other upstream 3482599 19543637 ~ 19569615 (-)
AMCG00003337 cnnm2b,borcs7,LOC107738473,LOC107708677,LOC107699104 other upstream 3741041 19802079 ~ 19876762 (-)

Expression


Co-expression Network