G141795


Basic Information

Item Value
gene id G141795
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 16653691 ~ 16656167 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU178367
TCTGTATCTGACATTCTTATACACCAGATATGTGTGACATCGTATTAGTaaataaacagtatattttgtctgtatgtttgtaatcaacaacaaaaacatctttgTTTCgggtatttatttatggtttcagagccatatatacattatatagaaCCATATCACCTTAAAAACGCTTGGCCATTTACACACAATCTTGTATCTACAAATTCATGATCACAGtcaaacaattttaaaactaaaatcagacaaacataaaaaaactaaaacaaagagaaaaacgACATTAAAAGAAgccaaaaacaacaagaaatttCAAACGGACACCTGTAAGACAGAGGAGTGGCATGATCTGGGTCTGCCCCACTCAGAAAAAATGGTAGTGGAGTGTGTGTTCAGATTTTAATCACAAAGACTTGGAAATGTGCTCATAAACAATGTCAGACATACATCTACAACCCATCGAGCGTTTATGTCCGGCCGTTtcctctttgtttatttatcaattttctCTCCGAGATCCCGTCAGACAACGTCCAGAATGAGAGTGcaattttcaaatgaaatcataAAACAGCCATCTTGAGGTCGAACATACTGGCAGAAATCCTTTTCTATGACTCCATTCCAGTCTTGTAGTGTTAACACCCATTCTAACAAAAATGCAATGGGAACATATCCTTCAAAAGCAGACTTTTGGCATCTGGTCGGATGACATCTGGGTTATAATGCTGAATCTAAACATCGCCCATCTTCCAAACCAGTGGCGCATCATTAAAGTAGAAAAGAGGTGAttcaacttattttttatttcttcccttcACAGTTTTACCCTTTTCATGGTAAACAGGACATAGTGCAAATCATCATGGAAGCAGAATGGAGTTTTTAGTGATTTGGTCATTTATAAATCGACAAGAGTATCCTTTTTGTGAAGTGGCCATCGAAGAATGGGTTTGCTCAGCTCTTGTCGCtggtttaatgtgtttttgttctttgcatCTGAGTCCTAATATATGCACCACTGTACTTGACTGATGCATATGAATGGcaaatcaattacaaaaacagCTGTCTTTGCCCAGTATGACAACGGTGTCCTTcacatatatattcagtattaCAGCGATGGATTCGacagaaataaagtaaaaagaacGTACAACATGATACATGATAGCTCATTACCCCTAGGCATAATTTGGAAGTCAGGCAGCTGAATTCCGTATGCAAATGACCATTTTATGAATTGCTGTAGGTTAAAGTATGTAATATTCTAATGATACAGTTCAGCCAAGTATTTGATATCTATTTTTGTTTACCCCTGAGGACATTGCACTTAATTTAAAGACTGTCACTTTATTCGTAGCCCaagatgcatttcaaaatgacgTTTACATGTGTAATgtggggaataaataaataaaatgaaattttgCTCCCCACCCCGCCTATTTACATAATGTCTTGCCATGTCATTCGTTGTTGGCATAAATTAACGCAAAATCATTTTGActtgacacacagacacacacacagctggtcAAAACAATGAGGTCACTTGAAAATCTTACTGAAAGAATCACATTTATCCGTGGTgtgaaaatctatttaaatgcaGTTAAACTCAGATGAGCAGGGTGACAAGATCATCATTCTCGCTTTAGTTCATTTTAGCAggttttgacattttctgtattcatcatgagttgttttgtttgtttttgtgtaactaAGCTCATACAATCTCCCTATTGAGACATACATACAAATGAACTGTGAGGAAAGCACTCATCTTAAAACTTTAACTTTTTGACTTGTAAATtccgtttttttattttaacacaggcACTTTCTTACCTAGGAACCATTGTCTCAAACTTGTTTATATATCCTTCCTTGGAACCATGGTAAATTGCCATACAGTCCATAAGGGATGCCAGTGTTCAAAAgataacaggaaaaaatatattacattctCCTTTTTACAAACGTATATTAAACTGTTGCACGGGTCATTCATTCAAGATCATGCGTCCTATTTGTTAGGATTTCAGTAGGATTTCCAGGTAACTGTTCATTTTAACCTCCaatctatatataaacatataaacgTCTTACATCTGTAGCATTGACTGTCGGGCTGTAAGCAGGACACACAAATCAATAGTTTATGACCACTAGAATAaggtcataaaaataaaaactatcaagaatgaaataaaaatggtgttGTAAAACATGGAGAAAAGTAAAATACCCAAttgtataaatatgcattagTGGGAACCGGTTTTCATTACCAAATGTTCAGCGATTAAGCAGAatttaaatgtactatataACAGGTATAAGGGACTTAAAAAGGTgctcttaaaaaaatacttcaagGAAAAAGTGAAATGGAGAATCAGTGAacaaatggattaaaaaaaaaaaaaatctataataaaacaaaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU178367 True 2457 lncRNA 0.35 2 16653691 16656167

Neighbor

gene id symbol gene type direction distance location
AMCG00003277 NA coding downstream 33131 16615320 ~ 16620560 (-)
AMCG00003274 NA coding downstream 62858 16566771 ~ 16590833 (-)
AMCG00003255 NA coding downstream 287705 16347424 ~ 16365986 (-)
AMCG00003254 LOC106590870,LOC107580847 coding downstream 311942 16331807 ~ 16341749 (-)
AMCG00003250 LOC107689951 coding downstream 386299 16237412 ~ 16267392 (-)
AMCG00003276 NA coding upstream 8573 16664740 ~ 16665930 (-)
AMCG00003266 NA coding upstream 24886 16681053 ~ 16710859 (-)
AMCG00003270 NA coding upstream 72747 16728914 ~ 16737927 (-)
AMCG00003267 casp7 coding upstream 93582 16749749 ~ 16757177 (-)
AMCG00003269 NA coding upstream 132064 16788231 ~ 16798189 (-)
G141740 NA non-coding downstream 155250 16494838 ~ 16498441 (-)
G141704 atrnl1b,atrnl1,LOC107755548,LOC107566689,LOC107702414 non-coding downstream 592653 16008063 ~ 16061038 (-)
G141681 NA non-coding downstream 661013 15988935 ~ 15992678 (-)
G141583 NA non-coding downstream 1435884 15217474 ~ 15217807 (-)
G141571 NA non-coding downstream 1481243 15163954 ~ 15172448 (-)
G141871 aldh18a1,LOC107684039 non-coding upstream 258771 16914938 ~ 16919500 (-)
G141879 LOC107575789 non-coding upstream 281467 16937634 ~ 16938046 (-)
G142060 NA non-coding upstream 1630836 18287003 ~ 18287212 (-)
G142064 NA non-coding upstream 1648464 18304631 ~ 18304978 (-)
G142066 NA non-coding upstream 1650195 18306362 ~ 18306683 (-)
AMCG00003231 NA other downstream 1512872 15056643 ~ 15140819 (-)
AMCG00003214 phs,pcbd1,LOC107743500,LOC107601888 other downstream 1979271 14669415 ~ 14674420 (-)
AMCG00003164 sec24c other downstream 3223367 13407272 ~ 13430324 (-)
G141004 NA other downstream 3774270 12861426 ~ 12879421 (-)
AMCG00003144 NA other downstream 3798350 12851021 ~ 12855341 (-)
G141826 NA other upstream 91894 16748061 ~ 16748431 (-)
AMCG00003320 NA other upstream 2887470 19543637 ~ 19569615 (-)
AMCG00003337 cnnm2b,borcs7,LOC107738473,LOC107708677,LOC107699104 other upstream 3145912 19802079 ~ 19876762 (-)

Expression


Co-expression Network