G141829


Basic Information

Item Value
gene id G141829
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 16798959 ~ 16801312 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU178408
GCcatgtaaatgtattgcaatgtgTCTGCAAAACAGCTTAGCTTCTAAACACACACGTTAAACCAAGTTAAACCAGTCAGCTGGAGTTTTATTCAAAGCACAAggataaaaatatacatttgtattttttacaagtcttttataaaacattatcatacagttttgttttcagtagcGTGCCAAATGATGAAATAATGCATCCCATTTTCACAAAGATAAACGGTTGTTACAAGATATTGTGGAGGTTCCTGGTCTACTCTTGAAGAAAAGCACTTTCTAAGACCCAAGAAAGCAAAAGGATTTTCTTTGAATATACCTAGCTTAGCTTTCTTCCTAattttcattcaaaaacagGAATGTCCTTTAACACCTCATGCTTCTTCACTGTTAGTCatggacattttaaattatctaTGAGAAGGGTGATaatcacacaaaatgcaatcaTAATCAATACCAAATTCATAGTGTGTGTGTCGTGCTTAGAGGAATCacacagaacattaaaaatggTCACGGCCTCCATTGAGCAAAGCAAAGTGTTTTGTTCTTACCAATGGAAGTATCATCTTCTTTAATGAGTTTCAGCTTCTTTTGATGGCTACTGCAGCAGCACATATAAATCCCCAGTGAGGCAGTACTGTATTAAatgtagtaaaaataaaacatatatatatatatatatatatataaattatattaaaaaaaaacaaaaaaaaaaacacaacattctTGAATGCTTTGGAGACGTGCAATAAACTGGAGGCAGAGAGGAAGACTGACTTTGAAACAGCTCAACATTGAAAACCAAACCTGCCGAAATGGATGTCAGCTGAACTGCTTTATTcagatgagaaaaaacaaatcacttgaCACTGAAGTGAACACATTCTCAGTTTGCAGCATAGATATTTTggaaattaaacattatgtcTGACAAAGCAAAATCCACTGTTCTGCCAAATGCCATCTTCACCAGACTTACAGTTGATAACCAAAGCCTGgttttggcaaaaaaaaaaatacagacaggATTTGAATCTTTAGatttttaacaacaaaatatggaatattctgcaaaaatattttgcatttttggcatgcttaaaacatattttgtgggATTCGCTTTTCTTAAGCTTAGGCTTAAAACCAGCACCTGGTTCTGCACTTTTTCGGTTCCTCTTCCAACTGGATCAGGAGAAGAGGAACAATTTAAGCCACGAGTGTAACTTCATGGCTTAAAGTATCTCTTGATAGAGTACATTACATCTGCTTATCTAAGGCTTAATTCAGAGGCCAACAGAAGAAAAGCATCAGTGCCCATGTGTATTGTACCACTATGCATTAACACTGTGCCAAATTCTCAGATCCCCTTCCACCTGGTTCCTGGCGTCTGGTTAAAAGCCACAGCCTCCGAGACGTCTGTAGAACAGCAGGTTACTTAAGTGCACAAGTTGATGTTATTTACTAGGCTCGATCAACTGTGTTTCACGACTTTTACTACTGTCACCAACCAGAAGACGGATTTCCTTTTGGCAAGCCCTACCTCTCGAACAATCTTTAATCCAGTGTTTCACTCTCTTGTACATTACTTATGCGTTCCTCGCTATTCATGTAAATCACAAGTCCATGGATCTATGTTTGCTCAAACATGCACCAATGACCTGGAAACTGGTGaagtatttgtacattttcaataactgcaGAAAATGAAAGGTAACCATTCTTATAAATGATGCAAATACCTGGTAAGAAAGCTgacaaataaaagcacaatccCTTTTAGATTTGTAAATTCACTATTTCCACACTTGTACTTTGTTCTGTGTATCGTAGTTTTGTAACACTGGTGAGTTTCCAAAATAACAGCTTACGGAACTCCAAtcccaaaccaaaccaaactcGAGGTCTGGCTCGGCTTCCGGTGGCGTCCTCGCGCGAGTACGGAGGAAGATACGCTTCAAAAGATACAAATGTCGAAGAACTATAAATATATCATCTGTTGTATAGTATCAGCAGCACTGAAAGGTCCCAAGAAGCACTTGCAACTCCAAGGAGAAAAGATCCTCTGTATAAATAAGGCACCAGTCCTGGTTGGTAGTTTGATTCAGTGGCTCTTCCCACTGGCTGGCTCTTCAGGTGTACTCTGATTTTCTGATGTAATTGGACGGGACGTACCCTCGCCTGCCCTCCACCTCGCCCAGCCACCACTCCTCGTTGCCATTGAGGTCGTGAAACTCCAGGATCTTCACTCGCTGGTGGGCAGATATGCTCAGCTCGTTGGCACAGCGGGCGCTGAAGGAGTAGATGGCATAGTAGATCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU178408 True 2326 lncRNA 0.39 2 16798959 16801312

Neighbor

gene id symbol gene type direction distance location
AMCG00003263 NA coding upstream 9001 16771324 ~ 16789958 (+)
AMCG00003262 NA coding upstream 50433 16745224 ~ 16748526 (+)
AMCG00003261 NA coding upstream 76897 16711272 ~ 16722062 (+)
AMCG00003259 adrb1,LOC102789796,LOC107581665,LOC107689959 coding upstream 127527 16665434 ~ 16671432 (+)
AMCG00003258 LOC107689962 coding upstream 145392 16625450 ~ 16653567 (+)
AMCG00003264 aldh18a1,LOC107081732 coding downstream 113653 16914965 ~ 16930855 (+)
AMCG00003265 NA coding downstream 132209 16933521 ~ 16941107 (+)
AMCG00003281 zdhhc6,LOC107684040,LOC107755527 coding downstream 505188 17306500 ~ 17311221 (+)
AMCG00003282 NA coding downstream 531022 17332334 ~ 17354879 (+)
AMCG00003284 NA coding downstream 575761 17377073 ~ 17402750 (+)
G141592 NA non-coding upstream 1544115 15252840 ~ 15254844 (+)
G141582 NA non-coding upstream 1581408 15217242 ~ 15217551 (+)
G141574 NA non-coding upstream 1608614 15189983 ~ 15190345 (+)
G141573 NA non-coding upstream 1612634 15186071 ~ 15186325 (+)
G141405 NA non-coding upstream 2282449 14462167 ~ 14516510 (+)
G141885 NA non-coding downstream 231113 17032425 ~ 17035242 (+)
G141955 NA non-coding downstream 716408 17517720 ~ 17517921 (+)
G141965 NA non-coding downstream 901860 17703172 ~ 17703460 (+)
G141966 NA non-coding downstream 911348 17712660 ~ 17712864 (+)
G141999 smc3,LOC107685530 non-coding downstream 1037399 17838711 ~ 17840604 (+)
AMCG00003256 NA other upstream 239753 16527189 ~ 16559206 (+)
AMCG00003257 ablim1 other upstream 297965 16464294 ~ 16500994 (+)
AMCG00003207 NA other upstream 2193411 14601317 ~ 14605548 (+)
AMCG00003195 NA other upstream 2498966 14283850 ~ 14299993 (+)
G141331 NA other upstream 2614316 14180780 ~ 14184643 (+)
G141962 NA other downstream 874967 17676279 ~ 17678522 (+)
AMCG00003291 bbip1 other downstream 919932 17721244 ~ 17725381 (+)
G142078 NA other downstream 1787262 18588574 ~ 18692204 (+)
G142172 NA other downstream 2734381 19535693 ~ 19537091 (+)
AMCG00003323 rnf122,si:dkey-51a16.9,LOC104925894,LOC103353499,LOC106606324 other downstream 2817569 19618881 ~ 19633150 (+)

Expression


Co-expression Network