G141871 (aldh18a1,LOC107684039)


Basic Information

Item Value
gene id G141871
gene name aldh18a1,LOC107684039
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 16914938 ~ 16919500 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU178459
CGGGTTCATACAGTTAGCACATTAAAATTTCATAAGGATCCGTACGAACTGCGGGAAAATTTGTGAATCCGTACGGTTAAAACCAACAGATTTCATACGGATCCATACAAATAGCCGGTGCCaattaaataatcatatttaatccCATCACAGACCACAGAATGTCACTGCTCTCCACCGCTGTTTCCAGCCACCTCCACCTCTTAAAATTACCTGCTCAACAATTGAAGCCAGCCGCCCCAGTGCCAGGCCGCACTCATCTCCACGGGTCACCACCGCGCTACCGAGCTTCACCACGATCCTCTTCGCATGCTTTAACTCACTGCGGTGAGCAAATGACTTACCATGGGTACGGGTGAGGGGGACTGTAATAAAAGGAATGTTACTCCAGTGTCGGACAGCAGTGTGTCTGCATGACGCACACATCGTGGGAAAATCTAGAGGAGAGATGCAGAAAGCGATGAACAGACACGGGGAAGGTGCCATGCAAAGCAAGTGAGGCTGCGGGGTGGAATGGGGTTAATGCGGTCAGGAGATGGGCAGCCCGGGGCCTTCTACCGTGGTAGCAGTATTTATAGTCAATAAATATTTcccaaaatattttccattggttttgtttgtttttttaagcattagGGCTCAAGCTGGGAAGATTATATTCAATGTTTTGACATAATATTTACCACAGAGAGGGCAGGGCACTCTAAATGACTATGCACCAAGCACCAAGTACCTCTGCGCCATTCATGAGCAGGGTGTGAGGGCACTACTGTTTCTACAAGCACTGCAGGGCACCAGCACCACTAAACAAAGTATGCAGGAGGAAGTGACATGGTTGCTAGAAAGCAAAGCATTAGAGGAGTCTTATTTAAATCCATAAAGTGAGAGATGCCATACTCTATGGAACAAGATGTTAAACAGCAACAGATAGAAATCCCTCTCCAAGTACATTAGTCTTATCTTTGCTGTAATAATACACTGACATCGAGATGATTGTCTATTTTCTTTGCTCAATACAGCCTTGAAAACTAGGAAACCTGCTGGGATTTTACATTCACACACTTCcccttattaattaattacattcttCCTTTGATATGCACTCACGTGTAAATGCATAATACTGTAAACACATTATTGGGTAAGATTAAATACCCCCCTGGTAGCTGCTCACTGTAACCAATAGTGCAGCAAAGCTTTTCAAACAGTAAAGCTTGTACAGAGGTTCGAACATCACCCACAGCCAGAGAGGGTATCAGAGGGTAAAGTGCCACATCAGCAACCTAAAACATCACTACAATAAAATGCACACAGCCTAACCTAAATAGATTACACAGATTAGAGTCGGGTTCAGTGGGGGCAAGGGGTAGTTTAACTTCTATTATCTCAGCACAATTGATTATAGCTGAAGGGTGAATGAGGttgaaagtgatttattttcaccCACAGGgaattgttgcattttcccagTAACTGTGGTACATGATAACAAATATCATTCCATATTACACTCTGGAAGATAtctaataaacattaaataccaTATTTAgatagaaaataattatgacaGTTTCAGATGGAATATTTGGCCAtgaaaaaacattcagtttaTAAAATTAAGTAACTTTTTAAAGGCTAGTAtccaaaaagttatttttaaaaatgtacagacagTTATCTTTAACATGCAATGGATTAATAAAGAACCAATCACACCCAGATCactgtaaacaaatatacactGTAAACAATCCTACACTGGTATGTGTGACCAAATAAACCACCAAGTCAGTAAATATAAACAAGATGCTTGTGACCAGagcctcttgCCAAGTACATTGCATGGTGTGATGTTTTAGGGACTGTAATGTATCATGCCATTGCTTTACAGGTTATATGAACCATGCGGTGGGATGGAAGACAATATACTTACACTTCGCTTGAGATGCTGCTCTGGTGAAACGGGGACAGGTTTTCATCTGCCAGCCCCCCGTGACTACTTTGAGACGGGAGCACAAAGCCAACCTTTGCAACATGATGTCACTGAACACAGGAATCTGGTTTCGGGGCAGCTGCATCGTGAACAAATTAACCACTAAATTACAGGCACTTTATAAAGCTCATCTCACAACCACAGGAACACAATTGTTTACTTAATGACTGTCATCATCTCACACCTACCCAAAAGAATTAGGCTAATCATTTAAAAACCCAGGTGGAAAAACTGCTATTGAGTTTAAACTTGAGTGctttttattctatttgtatAGAAAAACACTCAGAGCTGGTTTCACAAACCTAACACATTGTGTAGGTGCTAATCTGGCTCTGCAGCACCAACTCTCCTACTATTATTAGTAACATAAACAGTCTAATCTATTTAGCTTTCATTTCTtatcaaatcattttaaatcagtgtaaagcaaaatgaattaatacCTGTATCCTTCTCAACCCTGTTTGCTTGATATTTCCAGTATCTCGGATTTACAGACCTGTGGCAGGTTACTGTATCCCCCCCCACCAGTTGCATCCCAGAATGAAAACTTCACTGCATCCCCTCATTAAAGATTCCCAGACATTAGAATCAGGGTCCCTACGCTCCAATGAGAGGCTGGCAGGGGCGGGCGCTCTTGGGAGCCCAGCTCTGCTCTGTCAGCAGCTGATGAAACTCTGTCGGCTAttacagcactgtgtgtgtgtgtgtgtagccttTGATCAGAAACTGCAGTTTACTGATGGTACAATATTCAGACTTCTGTTTGCACTTCAACTGATACAGCAGAAGTGGAAGAGCATGAACCTTAAGTTATAGCCTCCATGCACCGGCTGGTCACTTGTGCTTATTAAAAACTGTATACCTAACTGGTACTGTGAAAATCCCTTCTGCAAAAATTCTTTGCATAATAAAGCTTGTACAGATCAGATATGATAAACCTTAAGTACAATTATGCAAAACATCAACAGTTCCTCGATTCTGTCTTtctgtatatgtgtacatagaaaaaaagaaaacctaaaaccTCTCTCATATTCAAGATccccttttatatatttaatacaaaaatgtattactatatAAATTAACACAAGACTGTACATCTAGGCTACTGGATAAGGAACTAATATTGCTCTGgacaaaaaacatttcccacAACTATGCTTAAGTGcaaaaaaattattttaattgaaattaattgccTCCACACGCACATTCATGACGTTAACTCTTCTTAGATTTGCCCCATTAGCCTTTTCCACGTAGTTCAGAAAATGAGCTAAGTAAAGTTGTCCTGCAATAAAAGAGCTCTAGATAATCATCCCTACAGTTCACAGGAATCACATCTGGTCTGCCCAGCTCTCATCAAGGTTACCACTAACAGCCCCATTATATAAAGAAATGTCTAGTAAGGTGATCATAtcaaagacatttttgtttttaggttaAACTGATTCCTGAAGATAGTGTTGCTTTTATTACACATCGAACTCCAATACCCAGACTTAAAGCCCTCTCCTGTGACGTGGCTTATCTGGGAagtgatataaaataataaagttattttacacacacaattattattattgatgatgataataataataataataatactaataaaatcaCATCACTAGACACACAATAATTTAGATAAACATTACTGCTGTGCTCTCCAGGAAATGGAAGTATGCTTTTCATGATATAACCTAGTAGGTTAGCTGATGCCAGAAAGTGCATCATAAAGAAAACACGATATTGTAACCTATACTATagaataattaatcatttttaagatttaaaatactAATGCATTCAAGTGACACCATAGCTAGCTAACAAGGAAGGAAGTCTgggttttttaaaatatcatttcAATAGATCACTGCTAACACTGCTGCAATAAAGGTTTATAGATAACttgctaaataaatgcaaacagaCAGTAAACTAATCATACAATCGAAAGCTACACGCTGGCTGTGTCAACAAAACCAAGACAGAGCCAGAACGGAATTACGGCcacgttcttgtagcgcagattcccgcagttctgcgcagagctgcagaatcccgccgatcccattggtggaggcAGGCAGACCCGCGCAGAGCTGCGTACACGACCTGAATTGCACTAGAATGGTTTTGGAGCCAAAATACGGGGTTTAGTTTAGCCAAGCCAGATACATGATGAGAGCACCACCACCATTTTTAACTAGCCTGCCTACCACGAGGTACCTGATATAGGTCTCTACACTGTGAAGTGTCTGTTTCAGGAAAAGAGCCGAGTTCCTTCTCTGAGTGATATGCGCACATGGATATTGTTATAATGTACTTACGCAGCACGGAAATGCATGACAAACTTACGCGTGTGTTTTGCAATATTTCGCCACCGACTCCTCAATGCGCGGTATCCTGCGAATTTGTTTGAGTCCTATTCCCTGTTTACCATTTCACCCATGCTGTGTATCCACGTCTTTGCTTAACTGCCATTCTAGACGTCGATCTGCGTAAAGAACCCAACCCTTTCCACGTTGC

Function

symbol description
aldh18a1 Predicted to enable glutamate-5-semialdehyde dehydrogenase activity. Predicted to be involved in L-proline biosynthetic process. Predicted to act upstream of or within phosphorylation and proline biosynthetic process. Predicted to be located in cytoplasm. Predicted to be active in mitochondrion. Is expressed in several structures, including central nervous system; endocrine system; eye; immature eye; and tail bud. Human ortholog(s) of this gene implicated in cataract; cutis laxa (multiple); enterocele; and hereditary spastic paraplegia (multiple). Orthologous to human ALDH18A1 (aldehyde dehydrogenase 18 family member A1).

NR:

description
PREDICTED: dedicator of cytokinesis protein 11-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU178459 True 4540 lncRNA 0.40 2 16914938 16919500

Neighbor

gene id symbol gene type direction distance location
AMCG00003268 NA coding downstream 1559 16908004 ~ 16913379 (-)
AMCG00003272 NA coding downstream 36806 16863943 ~ 16878132 (-)
AMCG00003271 NA coding downstream 52214 16853455 ~ 16862724 (-)
AMCG00003273 LOC107566408 coding downstream 85487 16826205 ~ 16829451 (-)
AMCG00003275 NA coding downstream 93918 16799690 ~ 16821020 (-)
AMCG00003279 tcf7l2 coding upstream 62369 16981869 ~ 17071511 (-)
AMCG00003278 NA coding upstream 214609 17134109 ~ 17138040 (-)
AMCG00003280 NA coding upstream 288935 17208435 ~ 17263614 (-)
AMCG00003283 vti1a,LOC107566351 coding upstream 373016 17292516 ~ 17304410 (-)
AMCG00003287 acsl5,LOC107566323,LOC107702457,LOC107755526,LOC107722228,LOC107581566,LOC107684041 coding upstream 393064 17312564 ~ 17325306 (-)
G141795 NA non-coding downstream 258771 16653691 ~ 16656167 (-)
G141740 NA non-coding downstream 416497 16494838 ~ 16498441 (-)
G141704 atrnl1b,atrnl1,LOC107755548,LOC107566689,LOC107702414 non-coding downstream 853900 16008063 ~ 16061038 (-)
G141681 NA non-coding downstream 922260 15988935 ~ 15992678 (-)
G141583 NA non-coding downstream 1697131 15217474 ~ 15217807 (-)
G141879 LOC107575789 non-coding upstream 18134 16937634 ~ 16938046 (-)
G142060 NA non-coding upstream 1367503 18287003 ~ 18287212 (-)
G142064 NA non-coding upstream 1385131 18304631 ~ 18304978 (-)
G142066 NA non-coding upstream 1386862 18306362 ~ 18306683 (-)
G142090 NA non-coding upstream 1916040 18835540 ~ 18837485 (-)
G141826 NA other downstream 166507 16748061 ~ 16748431 (-)
AMCG00003231 NA other downstream 1774119 15056643 ~ 15140819 (-)
AMCG00003214 phs,pcbd1,LOC107743500,LOC107601888 other downstream 2240518 14669415 ~ 14674420 (-)
AMCG00003164 sec24c other downstream 3484614 13407272 ~ 13430324 (-)
G141004 NA other downstream 4035517 12861426 ~ 12879421 (-)
AMCG00003320 NA other upstream 2624137 19543637 ~ 19569615 (-)
AMCG00003337 cnnm2b,borcs7,LOC107738473,LOC107708677,LOC107699104 other upstream 2882579 19802079 ~ 19876762 (-)

Expression


Co-expression Network