G141962


Basic Information

Item Value
gene id G141962
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 17676279 ~ 17678522 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU178585
ACTTGCATGATTGTGTCCAGAACACGAGAGGAGATTGACAGTGGggcaaacattttaatgtgcttGATCAAtctgttttcacacaaaaacacttaTGATGGCTTTGAATTTACCCAATATAGACATCTATTTCAAATACTCGACATTGCAATACTTACTGTACATGTAGCAATATAGCCAGATTCCAAAATAATATTCCTGTTGTTGAAAAATGCTTGgctttttacaagaaaaaaatagcattttttacatttaaatatgggTTCCTTGTAGTTACAGACGTGAACAATTACAAACGGTTTCATTTGGAGAGCTTTCAGATTAGAAGTCCTTTCATATATCATTTACACAGTCCTTTTAATTTCTCCTTTCCAGAGGATCTTTTTAAAAGACCTCCTAAAGTCGTGGTtgaatattgtgtatataactGGATTCAGGGAGCTATTGCAATACCCAAACCAAAAGAAGAATTTGAACAACGTCTCCGGGACGCAGCAGGAGCCGCATATGGCGGTCAGTGTGTATGTGAAGAAAAACGGAAACCAGCAGATGACAAAAACCCCTATTACTACAGCCAGAACGAAAGTGAACCTCTTTTCTCTGTTCTGCCGTCCTTTCCACCTGGAGCCCTTGGTGCTTTGATCGTCTTCCTTTTTGGGGATGCTATCTCCGGGTTTGATCTGGCTCAGTTTGGTCTTTCCTTTCCCACgattcttgttctttttcttaatGGAGCAGGGGTTGTTCACGTTCTGATCAGAAGAGGAAGACTCATCCAAGTCCATCCCATTGAGTTCAGCCTCTCCAGGCCCGTCCTCGTCTTCATCATGGTGTCCTTGGTCCCCGTTTAACTTCTCGGGGCAATCCTTGTCCACAAAGCCATTCTGCTTCTTGTCCGCCTCGTCTTTGGACCGTTTACCCGGAGGGATCCGCGTCCTATTCTTGGCGATCTGGTAAATTCGGACGTAGACCAGGATCATGATGATGCAAGGGGCAAAGAAGGAGCCGATGCAAGACGAGATGATGTACCACTTCTGCTCGTTGATCTTGCACGTCGGACTCTCTTCCTTGCCGCCCTCCTTCTTAATAGAAATCAAAGGGGGGAAGGATATGACCGCCGAGATGACCCACACGATGAAGATGATGCATTTGATCCTCCGGGGAGTTCTCTTAAGGTTGTACTCGATGGCTTTGGTGATGGACCAGTACCTGTCCAGGCTGATGGCGCAAAGATGCACGATCGAAGaggtgcaaaacaaaacatccaagGCCAGGTAGATTTCGCACCAGACTTTGCCAAAGTACCAGTAGCCCATGAGTTCATTGGCTAGTGAGAAGGGCATCACCAGAGTGGCCACCAGGATGTCTGCAGATGCCAAGGAGACTAAAAATAAGTTCTGTGGGGCTTTCAGGGCCCGGCTTGTAAACACTGCGATGACAACAAGGACGTTGCCAAATACTGTTAAAAGAATCAGGATCCCTACAAGTATCGTAATGGATACTGTGATCTGAACTGTGTAGGGTGGACCCCCCAGGGAAGTTTCGTTTGTTGCGTTTTGGCAACCCATTGGAAACAATCTGATTTCCTGTATAGGATTGTGTAAGTTGATCGATTGATTTTCTGAAAGGGGTGTTTAAATAGTGTCAATTAGACTTCCCCTTGAATAACTTCCATCGTtgcttttcagttcagtttcagtCTTTCAAATGACTTCCAGTGTTGTTTGCCGATTGGTTTGTTGCAGCAGGAAGGGGGTCACAAAGTTAGATCTTCATTTTGAGAAGgcatgacaaattaaaaacaaaagcgaCGCTGTTCAAAGTTCAGAGTTTGCGTAAAAACAGTGCGCTGACGACTGTTTCGGCcaactttttcttcatttttcttgtACTAGTGAAATTACAATCGGGCAATAAACAAAAGTCCGAAACCCACTGGTAGTAAGAAACCCAATCTTCTTACCTTGGGTGATGATGATGTCTGTGTCATAAATAAAAGTCCGCGGATCACCTTTACGCATAATTGCGCGAAGGTAACTTACGCGCGTCTGGCATGGCGAGGGGGATTGTGCAGAACGCGATCCCCCGCGGGTCTTCAAGTGGtggtcagaaaaaaatattcagaaatcATGTAGAAGTGGCATTATACTGTTTACGTCTTATCTGCGTTATTATCCCAGGTTGATCAGGATGTGCTTCACCCATACACATAGCAGCGCAGTAATCCTGTCGGCTTGTGGAGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU178585 True 2244 TUCP 0.44 1 17676279 17678522

Neighbor

gene id symbol gene type direction distance location
AMCG00003284 NA coding upstream 273529 17377073 ~ 17402750 (+)
AMCG00003282 NA coding upstream 321400 17332334 ~ 17354879 (+)
AMCG00003281 zdhhc6,LOC107684040,LOC107755527 coding upstream 365058 17306500 ~ 17311221 (+)
AMCG00003265 NA coding upstream 735172 16933521 ~ 16941107 (+)
AMCG00003264 aldh18a1,LOC107081732 coding upstream 745424 16914965 ~ 16930855 (+)
AMCG00003295 smndc1 coding downstream 213701 17892223 ~ 17896705 (+)
AMCG00003301 NA coding downstream 362253 18040775 ~ 18059015 (+)
AMCG00003302 xpnpep1,LOC106512107,LOC106589391 coding downstream 382914 18061436 ~ 18073141 (+)
AMCG00003305 NA coding downstream 627524 18306046 ~ 18339835 (+)
AMCG00003306 LOC106586852,LOC105012299,LOC107729347,LOC107746059 coding downstream 760985 18439507 ~ 18493790 (+)
G141955 NA non-coding upstream 158358 17517720 ~ 17517921 (+)
G141885 NA non-coding upstream 641037 17032425 ~ 17035242 (+)
G141829 NA non-coding upstream 874967 16798959 ~ 16801312 (+)
G141592 NA non-coding upstream 2421435 15252840 ~ 15254844 (+)
G141582 NA non-coding upstream 2458728 15217242 ~ 15217551 (+)
G141965 NA non-coding downstream 24650 17703172 ~ 17703460 (+)
G141966 NA non-coding downstream 34138 17712660 ~ 17712864 (+)
G141999 smc3,LOC107685530 non-coding downstream 160189 17838711 ~ 17840604 (+)
G142014 NA non-coding downstream 261339 17939861 ~ 18000435 (+)
G142062 NA non-coding downstream 816402 18494924 ~ 18496277 (+)
AMCG00003256 NA other upstream 1117073 16527189 ~ 16559206 (+)
AMCG00003257 ablim1 other upstream 1175285 16464294 ~ 16500994 (+)
AMCG00003207 NA other upstream 3070731 14601317 ~ 14605548 (+)
AMCG00003195 NA other upstream 3376286 14283850 ~ 14299993 (+)
G141331 NA other upstream 3491636 14180780 ~ 14184643 (+)
AMCG00003291 bbip1 other downstream 42722 17721244 ~ 17725381 (+)
G142078 NA other downstream 910052 18588574 ~ 18692204 (+)
G142172 NA other downstream 1857171 19535693 ~ 19537091 (+)
AMCG00003323 rnf122,si:dkey-51a16.9,LOC104925894,LOC103353499,LOC106606324 other downstream 1940359 19618881 ~ 19633150 (+)
AMCG00003324 NA other downstream 1972654 19651176 ~ 19658477 (+)

Expression


Co-expression Network