G141999 (smc3,LOC107685530)


Basic Information

Item Value
gene id G141999
gene name smc3,LOC107685530
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 17838711 ~ 17840604 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU178636
GTTTGATTTGCTCCTGTCTTTCAGAACTCAGCTGCTCCTTTTCCTCTTTCATGGCTGAGATTTTGGCCTTCAGTTCTCGAACAACACGTTCAGTTTCCTCCACTTTGTCTCGCGCATCCTGCTGAGCATCACGCAGTTGTCTTGATTTGTCCCCACACGTCTCTCGTTTAGAAGacagCTCATCAAGTTTGGCACGGGTCTCATTGAGCTCCTGGTTATAGATTGTGTACTCCAGGGCCCGTCTCATTTTATCCCATTTCTGGTACTGAGCCAACTCCTCCTTTTCATCCTCCAGAGTGTGCAGTCTCTCCTCGATATACTTCAGCAGTTCATTGATCTTCTCCCTTTTCCCCTCAGTTTCCTTCATGAGAGATATACTCTCTTCCTTGCGTTCATCGTACACTCTTGTCCCTGCCACCTCCCTCAGCAGTTTCAGCCGCTGGGAGTCTGGAGCCGTG

Function

symbol description
smc3 Enables DNA-binding transcription factor activity, RNA polymerase II-specific. Involved in regulation of transcription by RNA polymerase II. Acts upstream of or within fin regeneration and mitotic sister chromatid cohesion. Predicted to be located in chromosome, centromeric region. Predicted to be part of meiotic cohesin complex. Predicted to be active in nucleus. Is expressed in several structures, including axis; blastoderm; digestive system; head; and nervous system. Used to study Cornelia de Lange syndrome. Human ortholog(s) of this gene implicated in Cornelia de Lange syndrome 3. Orthologous to human SMC3 (structural maintenance of chromosomes 3).

NR:

description
PREDICTED: structural maintenance of chromosomes protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU178636 True 458 lncRNA 0.49 4 17838711 17840604

Neighbor

gene id symbol gene type direction distance location
AMCG00003284 NA coding upstream 435961 17377073 ~ 17402750 (+)
AMCG00003282 NA coding upstream 483832 17332334 ~ 17354879 (+)
AMCG00003281 zdhhc6,LOC107684040,LOC107755527 coding upstream 527490 17306500 ~ 17311221 (+)
AMCG00003265 NA coding upstream 897604 16933521 ~ 16941107 (+)
AMCG00003264 aldh18a1,LOC107081732 coding upstream 907856 16914965 ~ 16930855 (+)
AMCG00003295 smndc1 coding downstream 51619 17892223 ~ 17896705 (+)
AMCG00003301 NA coding downstream 200171 18040775 ~ 18059015 (+)
AMCG00003302 xpnpep1,LOC106512107,LOC106589391 coding downstream 220832 18061436 ~ 18073141 (+)
AMCG00003305 NA coding downstream 465442 18306046 ~ 18339835 (+)
AMCG00003306 LOC106586852,LOC105012299,LOC107729347,LOC107746059 coding downstream 598903 18439507 ~ 18493790 (+)
G141966 NA non-coding upstream 125847 17712660 ~ 17712864 (+)
G141965 NA non-coding upstream 135251 17703172 ~ 17703460 (+)
G141955 NA non-coding upstream 320790 17517720 ~ 17517921 (+)
G141885 NA non-coding upstream 803469 17032425 ~ 17035242 (+)
G141829 NA non-coding upstream 1037399 16798959 ~ 16801312 (+)
G142014 NA non-coding downstream 99257 17939861 ~ 18000435 (+)
G142062 NA non-coding downstream 654320 18494924 ~ 18496277 (+)
G142083 NA non-coding downstream 916309 18756913 ~ 18757187 (+)
G142085 NA non-coding downstream 994936 18835540 ~ 18840753 (+)
G142086 NA non-coding downstream 1001850 18842454 ~ 18842729 (+)
AMCG00003291 bbip1 other upstream 113330 17721244 ~ 17725381 (+)
G141962 NA other upstream 160189 17676279 ~ 17678522 (+)
AMCG00003256 NA other upstream 1279505 16527189 ~ 16559206 (+)
AMCG00003257 ablim1 other upstream 1337717 16464294 ~ 16500994 (+)
AMCG00003207 NA other upstream 3233163 14601317 ~ 14605548 (+)
G142078 NA other downstream 747970 18588574 ~ 18692204 (+)
G142172 NA other downstream 1695089 19535693 ~ 19537091 (+)
AMCG00003323 rnf122,si:dkey-51a16.9,LOC104925894,LOC103353499,LOC106606324 other downstream 1778277 19618881 ~ 19633150 (+)
AMCG00003324 NA other downstream 1810572 19651176 ~ 19658477 (+)

Expression


Co-expression Network