G142014


Basic Information

Item Value
gene id G142014
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 17939861 ~ 18000435 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU178659
CCAAAGACCCTTTGcgtttatatgcatttaatgttTGAAGAAAGGAAGCTGCAATACAGAGTGccacatttgtattacattcaTTCATGTGCAGGTACCAAATATTTCAATGCAGTTAAGATGCTTTACaggaacattattttatttccatttatttaaaaaatatatatttaggaaagCAATAGAAGCCTTTGTTAAAAGAGGATTCAGTTAAGTAGGATTTCAACTGTCAACACTGCACAGTCAGCGtttatattttgatacaaaGGAGGGAAAAGAAtgttttgagaagaaaaaaaaaacttgacaaATCAGATGTATGGTTTTAATTGAAAGGCAATTGGGAACCTCCTTTTTAACAGTATTTTCACCCTACCCCGCCCCTGCCCCCAAGGGTCTGTGGCATACAAAAGTCCTGATGCAGCAAGTGCATATTTTGTGCTGTGCATCTGGGGAATAACTGTCAAGGCACAATGGCACACCTTTACCGCGGCCTCTTTGCCACGAGACGTCTCGGCTCATGTAGTTCGATGCAAAGCGAATAGAACCGTAACTCCGAATTCATGGAAATCCTCCACTTGAAAATCTGCCAAAACCTATTCTGGGCTGTTCCCTTTGCCACCCCTGATAAACTCAAATTGCTTCTTTGGATAACAGCTTTTGATATGGAGGCTTATTTCAAATTAGGTTTCACCAACGAGGCCCAAAACCATCTGGCCCATTTCAGAATCCAGTACAGAGGTACATGTAAAATTGAAGCACTACTCCAATGGTGCACTATATCCAGCACTGAGATTTGTATCGGAGATCAAAATcaggatttttcttttaatgcaaaCCTGGCATTTAAGGTTAACCAGTGTGTACACATTGGAGACCTTACACCTCCATTACCAATAATATAAGAGAAGGTAAGCAATAGTCTGCATGTGAATAGCAAAACTGAATGAGGTTCGACTGTTGACAACCCCTTTAATAGAGCCTCCAACCCAATACTTCAATATTGCTTTGCATGAACTGTTGTGTACTTGTTGCATAGAATCCTCATaccatacatttcaataaatcagTTGACCGCTAAATTTTAAAAGCATGGCTTCCCGTATTCGTGTGCAGATTTAGTTTCTACTGCACACATTGAATGCTACACAAGGTTAACTGGAGTGAAGTGTAAAATAGCTTTGTGATGCTTTCATTCAAGTGCAATAGTCTTACCTTGAAGATGGAAAGACCaagtttgtatttaaagtatgGACAAAGCTTTAGAGCATCATGCGagccaaacaaaaacagatcaaataaGCATGGCCAATTGCAAGAAAATGGTGTTTGGTATGCAACAAACACTGTGGAACAATACAATGCTAAAAtctgtgaatgaatgaatgaaccaAAATGCaactgaacatttattttcacaagtaCCATTAGTTGAGTTCTCCTTTCATTCAAGACCGTGTCCCAAATTTCACAGACTTAAAATGGCAATTGTTCCATAAAATACTggttttatttgtgaatttacACGGATTAGCAATACATCTAAAAGCAACTCTATGAGATGCGCATTAATATGGTTTTCCACAGGTCACAGAGCGGCTTGGCTCAAGTGTCAAAGCCGGTTAAACAAAAGAGGCATTAGTAAAAACAAGGTGCAAAAAGTTTGGGGAAATAAATCCCACACATCCAATCAGAAATATATGCTTGCAAACTTATTAAAAGCATAGTGCTCAAAACTATTTcaaaaaatatactgtaatacaaATAAGGAAAAATAGAATTACGTTTGAACACAGAACGTTTTCTAAAGGAAgcacaaaatgaacaataaaagaTAAAcgttttaatttcttccagtATTAGTTAATTTCTCCTTCTGAAACTTGCATCCCTCTCCAGCTTtcgtatttgttttccaaaccCAGCCCAACTCTGATCCACATGCTATATACAAAGTTTGAATGTGCCTCTTGCCTCCtgccaaagaaaataattcacattGCTAGCTGGGATATTGGTATCCATTTGCTCACGGCCTGTAATGGGTCactccattttttatttatttatttaacttttgtcTTGGTGTCAGACATGATCCAaatcaacaagaaaaataaaaatgctgctttatgCATGTAGAAAGGTTACTGTACATCCCACTAAACTATGACAAACCTCACCGAACATATCTAGTTACACATACAAGGAGtacatgaggaaaaaaaaaaaaaaccagaagCCAGACAAAGTGATAAACCTGGAGAAGAGTACAAAAGGTGGGCATGCAGGTAACCCTAGATAAACAAAAGCATGGATACATATTTGCCAGTTAACATTTTAAGCTCCCCACCATGGCAGATTGACTGGAGGCCTGCATGGGTGACCTcccggaaaaaaaaaaaaatcatactcCCACCACAGACAGAAAAGGCTCCCAAGAATCCCAAACAGCTGCCCTGTTTGAAATGTAACGGATGACGAGGAAACCTAAACTCAGGAAGCAGCTGTGTTGATGCTCAAGCGAAGGATGTAGAAATCCGTGGCTGGTACCAGAAGGATTCCAAGGTCAAACAGCTGTCTTTCATTTCACTCAaacccgcccccccccacctcgCTGAGGTCTGAGTCAGGTGTCAGTCACAGGGTGCCGTTAACAAGCCTGCACTGCAAACAAGGCCCCAGTGCTCTCTCAGGGTCCGGAAGCGGTTGCTTTCCGacctctcccctctctcatCCAAGTAGAGACTTACTTTTGGAGTGATTGGCATTCTCTGCATAAAATTGGGAACTTAGACTTGGCGCTTTCAGTAATGCCCTTTACATTTTCCATGTGGGTATAAAGCTTACAACCGTttcactgtcaaaatgcagAATTGAAAGTGGAGGAGGACTGAAacaatggccaaataaaattaaCCCCTGGAAgtaattctattttatttaccaaatgtgtatttatatacatgtatatatttcaaatgtctttAAGATAAACCACTGACGGACAAGACTTCACTTTCAAAACCTAAAACGCACACCATACGTAGACTGTTCTCTATTCACCATACCACAACTTTTCCCTTCTCATTTAATTCTCCTTCATTTTGGTAAAATGTCTGAACACCTGTCTGTAGGATTTGTTATATACCACAAGAAAAGtgcagtaaaagtaaaaaaaaatataaaaaaaaaaaaaaatctataaccACAAAATCCAGTTTTTAATATAATCGCCTCTATTTGTTTTAGTAATCTGAGCTACAATACCAGTAACAATACTATATAACTGAGAAATCAGGCATTACTAGATTTTCAGCTCTAGGAATTTAGATTCTTGCAAAACATGCTTGACATTTGTATGTAACGGTATAGAAATGAGTATAAAACTGATTGGACTAATAccagatttagatttagaataaaaaagattttattcaaatgagatgattcctttttcttttcagttctcaaaatgtaaatgcaattaaaacctACAAGTTACAATGATGACATTTTCCGAGATTGTGATTCACTAAAACGtgattttttcccctcctcctttTGGCAAGAATAAAAATAGGTAACTAATATGGAACAAAATGTGTACTTTGAAGAAAGGCTCCCAATGAAACTACACAGGTTTCTCCAACAATTGAGTCAGTGCAGAATTATTAGCTTCtctggaaaattaaataaaaataaggtaCAGGCATGCATATATAGTAAGGACAACCTGTACAGACCCAAATAAGTATAGACCCATTAATCTTGAACTGGTTTCAGAAACCCTGTAATTAGTGATAAACTGTTAGTTTCCAGTGTGGCAGTCACTTATTTGGTATGGCATTCCTAATGCAGTTAACGGTTCCAGGAACTAGTGGACTGAACATAAAGTGACCACAGCATCCAagtggagacaaaaaaaaaaaaaaaaacaaaaaaaaaacaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU178659 True 3955 lncRNA 0.37 2 17939861 18000435

Neighbor

gene id symbol gene type direction distance location
AMCG00003295 smndc1 coding upstream 43156 17892223 ~ 17896705 (+)
AMCG00003284 NA coding upstream 537111 17377073 ~ 17402750 (+)
AMCG00003282 NA coding upstream 584982 17332334 ~ 17354879 (+)
AMCG00003281 zdhhc6,LOC107684040,LOC107755527 coding upstream 628640 17306500 ~ 17311221 (+)
AMCG00003265 NA coding upstream 998754 16933521 ~ 16941107 (+)
AMCG00003301 NA coding downstream 40340 18040775 ~ 18059015 (+)
AMCG00003302 xpnpep1,LOC106512107,LOC106589391 coding downstream 61001 18061436 ~ 18073141 (+)
AMCG00003305 NA coding downstream 305611 18306046 ~ 18339835 (+)
AMCG00003306 LOC106586852,LOC105012299,LOC107729347,LOC107746059 coding downstream 439072 18439507 ~ 18493790 (+)
AMCG00003312 neurl1,LOC107676877,LOC107746293 coding downstream 1184698 19185133 ~ 19195816 (+)
G141999 smc3,LOC107685530 non-coding upstream 99257 17838711 ~ 17840604 (+)
G141966 NA non-coding upstream 226997 17712660 ~ 17712864 (+)
G141965 NA non-coding upstream 236401 17703172 ~ 17703460 (+)
G141955 NA non-coding upstream 421940 17517720 ~ 17517921 (+)
G141885 NA non-coding upstream 904619 17032425 ~ 17035242 (+)
G142062 NA non-coding downstream 494489 18494924 ~ 18496277 (+)
G142083 NA non-coding downstream 756478 18756913 ~ 18757187 (+)
G142085 NA non-coding downstream 835105 18835540 ~ 18840753 (+)
G142086 NA non-coding downstream 842019 18842454 ~ 18842729 (+)
G142146 NA non-coding downstream 1512048 19512483 ~ 19513132 (+)
AMCG00003291 bbip1 other upstream 214480 17721244 ~ 17725381 (+)
G141962 NA other upstream 261339 17676279 ~ 17678522 (+)
AMCG00003256 NA other upstream 1380655 16527189 ~ 16559206 (+)
AMCG00003257 ablim1 other upstream 1438867 16464294 ~ 16500994 (+)
AMCG00003207 NA other upstream 3334313 14601317 ~ 14605548 (+)
G142078 NA other downstream 588139 18588574 ~ 18692204 (+)
G142172 NA other downstream 1535258 19535693 ~ 19537091 (+)
AMCG00003323 rnf122,si:dkey-51a16.9,LOC104925894,LOC103353499,LOC106606324 other downstream 1618446 19618881 ~ 19633150 (+)
AMCG00003324 NA other downstream 1650741 19651176 ~ 19658477 (+)

Expression


Co-expression Network