G142062


Basic Information

Item Value
gene id G142062
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 18494924 ~ 18496277 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU178715
aatatttggcTTTGTAAACATGCTTAATATAAAGAATTGGATATTAAAGACAAGAATTACCCAAAATGGAAGTAcataaaaaaaggcattttgtgATGAATAATTATTCATAACATTCTAAATTGAGAGAAAAACTATGAGAAATTTAGGCAATCAGGTTCCGTTCATACTTATTTTCCATGTTTATGTTGAAAACTCTGAATTTGCACACATGAGACTCTCCCTGGTTTTCCTGTAACATATACATTCTGAACTTagctttttaattactattgtaTCTTCTATTTCTATCTGCCATAATAGTGTTTTCCTTTATAGGAAAAATCAGGTTCCATGAAAATAAGAACATCAAAAGACATACATCTATTCgtttgtctgtgtgagtgtataattacatttcacacattttctctACTCATATCTAACAGGTTTTCAGTGAGATTTgcagatttctttttctttttgagaacaatgattacattttttaaataaaattaaataactctgATTAACTGCAGTCTTTCACTGAAATCTTAATCGTAGATTTGAGAGACGTCCAGAAATTCAACAAGTACAAGTTAGCTCACAACGACAAAAATCCACTGCAGAGCTTCCATACTCAGTTTCCAATCAGATTAATATTTTGCTGGAAACCACTCTCTTATATTGGAAAAAGTAATAATagtgatacaaaaaataataattaatgctgTGCAGAAGTTGTTCTAGACATGGCTCTCATTTATACGTCCCATGGGAACAGCTCAGGAACAAGGTTTTGGACTCCTGCTAGCACagagttttttgtgtgtgtgcatgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtttgtgcctgtgcgtgtgtgtgtgtgtgtgtgtctgtttgattCTTTGGTTTGGAAATACCAATGGCACAATGTCTTTACAGCAGGAAAAGGATTCATTTCAAAGTTATCCAAAACTCTCGCTGAACATATATAATTCTAACTAGGCCTACAACTACAAGAGTGCATTATAACCCTTGCTTTTTGACTTCATAGTATATACATTCACAATGAATGGGCATAGATCTGAGTTATTGTACATAGTATACCAAGAACTATCTTTCAATGTATATTCTCATGGAAGGGACCGTACAGAAGAAATTAAGGGAATGGCATGCCTGTGAGGACACAAAATTCAGTAGTCTAAGCTGCCAATTGAAACCAGTTGAAgttcttctttctttccccaCTTTTGAGAGTTAGCAAGCTTATTTTTGTAGATGCGAGAGTTTTGTTACTGTAAAGCttttatataaaacagtttagatgtacagtgttttgtttgactACAATTCTGTTCCAT

Function

GO:

id name namespace
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function
GO:0015081 sodium ion transmembrane transporter activity molecular_function

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU178715 True 1354 lncRNA 0.34 1 18494924 18496277

Neighbor

gene id symbol gene type direction distance location
AMCG00003306 LOC106586852,LOC105012299,LOC107729347,LOC107746059 coding upstream 1134 18439507 ~ 18493790 (+)
AMCG00003305 NA coding upstream 155089 18306046 ~ 18339835 (+)
AMCG00003302 xpnpep1,LOC106512107,LOC106589391 coding upstream 421783 18061436 ~ 18073141 (+)
AMCG00003301 NA coding upstream 435909 18040775 ~ 18059015 (+)
AMCG00003295 smndc1 coding upstream 598219 17892223 ~ 17896705 (+)
AMCG00003312 neurl1,LOC107676877,LOC107746293 coding downstream 688856 19185133 ~ 19195816 (+)
AMCG00003311 LOC103355274,LOC101166281 coding downstream 714306 19210583 ~ 19224956 (+)
AMCG00003315 slk coding downstream 919415 19415692 ~ 19454966 (+)
AMCG00003316 NA coding downstream 1073527 19569804 ~ 19573974 (+)
AMCG00003321 NA coding downstream 1092357 19588634 ~ 19605421 (+)
G142014 NA non-coding upstream 494489 17939861 ~ 18000435 (+)
G141999 smc3,LOC107685530 non-coding upstream 654320 17838711 ~ 17840604 (+)
G141966 NA non-coding upstream 782060 17712660 ~ 17712864 (+)
G141965 NA non-coding upstream 791464 17703172 ~ 17703460 (+)
G141955 NA non-coding upstream 977003 17517720 ~ 17517921 (+)
G142083 NA non-coding downstream 260636 18756913 ~ 18757187 (+)
G142085 NA non-coding downstream 339263 18835540 ~ 18840753 (+)
G142086 NA non-coding downstream 346177 18842454 ~ 18842729 (+)
G142146 NA non-coding downstream 1016206 19512483 ~ 19513132 (+)
G142170 NA non-coding downstream 1035135 19531412 ~ 19531867 (+)
AMCG00003291 bbip1 other upstream 769543 17721244 ~ 17725381 (+)
G141962 NA other upstream 816402 17676279 ~ 17678522 (+)
AMCG00003256 NA other upstream 1935718 16527189 ~ 16559206 (+)
AMCG00003257 ablim1 other upstream 1993930 16464294 ~ 16500994 (+)
AMCG00003207 NA other upstream 3889376 14601317 ~ 14605548 (+)
G142078 NA other downstream 92297 18588574 ~ 18692204 (+)
G142172 NA other downstream 1039416 19535693 ~ 19537091 (+)
AMCG00003323 rnf122,si:dkey-51a16.9,LOC104925894,LOC103353499,LOC106606324 other downstream 1122604 19618881 ~ 19633150 (+)
AMCG00003324 NA other downstream 1154899 19651176 ~ 19658477 (+)

Expression


Co-expression Network