G142418


Basic Information

Item Value
gene id G142418
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 20764544 ~ 20766330 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU179140
aatcagcaggggatcaaatactttttcccccgcacacattatatatatatatgacagttTAACATGATCAAATGAGGCCCATGCACATCCAGAAGTATCACTTGATTAATGACCttgaattataaaacaaaaacccaacaaTAGGGGTCTTTCTATCTAGGAACAAAATCTCTAATGTGGTGTAGAAACTGTAAATTTTTTCTGCATAAAGTTTAGTATGGAGAGATTGAATGTCTAATGTACTAAAATGGATGTGAAACATGCAGAGTTCCATCGTGATAAATTCCAGTGATAAAACTGCAAAGAAGGGACACACTAGCCCAATATCCTAAACTCAAGACTGTTTCAGGCTTGCAGAGTGCCTATAaaccagatcttttattcaaagaTCCAACTAATTTGTTCAACACGTCTCACATTCTCTCTCAGTCTTTTTTTCAGAAAGGCAAAAACTTTAAACAAGGTTAATCATtctttctaattattttaaaatgtgtctaaacttaaagtaaatgaataagaataataatcttTAGTTAAACTGTAAAAAGTATAATACACTTCTATTCCTGTTCACTTAACATTACAGTGGATATATATACCCTTTCAAAATTCTATAGATATACTTATTTCAGACCGctttcaaacacaatattaagGCATATGTGATACATGTGAAAATCgtgttaaaatattcaaatcatCAAACTCTTCCGCTTACAATGTGAAATTCAGCTAAGTAAGTATTCTctgaaataacaataaattgTTGTAccataacatttatttctcttttttctcaTAAATGCTAAACTTAAAATAGCTTAAGCACCTAAGACAGTGAGGAAATCCACTGGATGCAAACTATAccgtttagtttgttttaattattttgctaaATATACCATGTCAGCTTTTCAAGTGCAAGCCTGTTGGCCGTTGCTCAATCTGGTCAGATTCTGAGAAAGTGACCGGTTTGGGCTCCCCCATTCAAATCTAAGTCTGTTCTGAAATAGCCAtcaaagcacacatttaaaGCCTTTTCAAAGTGTGTACACTGACATAAAATTTAACAGGACGAGCCACATTGCACGTATTGCAGGCACTTGGCATTGTTATGTTGTAACACAGCTATAGCAGACCAGCTGCAGAACAAGGGAAGGGTCCTGTACCACTATGGATttcagtatatacagtataaaaaacaaatggatgaTAGCGCTTGCCCATCAAACCTAATCAATAGGGTTTAAGACAgttcatataatttttttatcagGTTAAGACAATTGTTCCCCTGCCTTACTGAGGAGCCCTTGGTGTGACAGTCTAAACACCATGGCAGAAATGAAGAAGCTCCCAAAAAAGCCAAGCCCTATGGAAAATCTTAGCAGCCGCTCGttagacaaaaaagaaaatgaccaaGACTGAGCTGCAAAGGAACCAAGGCTGCATAGCAATATTTGACCACAGAGGCAGAATCGGTATTTGAACAAAGCACCAGCCACCCCTTGGCAGGACAGGGTGAGATAGTGAGAAAGAGCAAGAGGACTGCCACCCTGTCATCCATCCCTGTGGCCCCAGTGCTCTGGATAGGCAACACTCTATCATACGGAGAGACTGCGAGCCGTGGCAGCTGAGCCCTGTGCCCTCTGGATCACTGCCTGACACTTCTCGCATCTCAGCAGACGGTTGTTTTCAAACACGCCCTCGTTGCGGGGCACCCCATGGGCGCCATCAGGGAAGGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU179140 True 1749 lncRNA 0.39 2 20764544 20766330

Neighbor

gene id symbol gene type direction distance location
AMCG00003346 NA coding downstream 134948 20623403 ~ 20629596 (-)
AMCG00003347 NA coding downstream 160539 20601752 ~ 20604005 (-)
AMCG00003345 NA coding downstream 401958 20223823 ~ 20362586 (-)
AMCG00003344 tlx1,LOC107585374,LOC107588667,LOC107694453 coding downstream 598961 20159328 ~ 20165583 (-)
AMCG00003341 fbxw11b,LOC106568099,LOC105893085,LOC107687420,LOC105905987 coding downstream 730955 20019858 ~ 20033589 (-)
AMCG00003350 LOC106532717 coding upstream 10249 20776579 ~ 20796389 (-)
AMCG00003353 NA coding upstream 124421 20890751 ~ 20892570 (-)
AMCG00003354 NA coding upstream 141350 20907680 ~ 20912693 (-)
AMCG00003352 NA coding upstream 176426 20942756 ~ 20945804 (-)
AMCG00003355 abcc2,LOC103476915,LOC102299438,LOC101468212 coding upstream 226155 20992485 ~ 20996275 (-)
G142417 NA non-coding downstream 6087 20758119 ~ 20758457 (-)
G142406 NA non-coding downstream 20940 20659612 ~ 20743604 (-)
G142404 NA non-coding downstream 94913 20655063 ~ 20669631 (-)
G142357 NA non-coding downstream 388918 20375386 ~ 20375626 (-)
G142348 NA non-coding downstream 583521 20180795 ~ 20181023 (-)
G142420 NA non-coding upstream 1024 20767354 ~ 20767630 (-)
G142421 NA non-coding upstream 4393 20770723 ~ 20771795 (-)
G142433 NA non-coding upstream 43628 20809958 ~ 20810651 (-)
G142439 NA non-coding upstream 46743 20813073 ~ 20813646 (-)
G142440 NA non-coding upstream 48569 20814899 ~ 20815198 (-)
AMCG00003337 cnnm2b,borcs7,LOC107738473,LOC107708677,LOC107699104 other downstream 887782 19802079 ~ 19876762 (-)
AMCG00003320 NA other downstream 1194929 19543637 ~ 19569615 (-)
G141826 NA other downstream 4016113 16748061 ~ 16748431 (-)
AMCG00003231 NA other downstream 5623725 15056643 ~ 15140819 (-)
AMCG00003214 phs,pcbd1,LOC107743500,LOC107601888 other downstream 6090124 14669415 ~ 14674420 (-)

Expression


Co-expression Network