G142531


Basic Information

Item Value
gene id G142531
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 21176344 ~ 21213391 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU179279
caaactttaaaaatgattgaattATCAAATTTAATAGATAAACCTTCCATCTCCAGCACagttaataattgtaatttctgctcatttaaaaaaaaatcatgaataaacattgaaattacatttatactATCATAATAGTGCACTGTACACCAAGATCAAATTTACACCGATGTGTGTGGCCAGTATGAGGAATAAAGGAATAAACTCCCCCCAAAGAAACTTCCAAAGTAACAAGGATAACATTCTGCAATCCAAGAAGATCCAAGGGGTTTTAagtaataaaatcatatttaataacacatttttacagtGCATATTCAAACAGTCATCTTGTATCTttacaaacaatgaaaaaaatctaCCAACAGCAAAAACAGTAGAAATCCATCAGTGTGAGAAACAATGATGACTTTATAGCAAAGGTCATAAAACAGGGAAGGACACAAACTGAACTAAATTAAGAATTCTGATGCATTAAGGaccaaaatattttgaaaattaatatCTCAGTTTATTTACTCATGTCAGGAGGaactcaaaataaaaacctgataCTCACAAAAGGCGTTTTACTTCAGTTTATTATGATGCATCACAAGGATTTTCAAATTAAGGTAACTATGCCATCAGCTGGCAACAACTGTGTATTGCAGAAAAGctacatcaaaaataaaaattcttaAGTTTCCATTAAAAGCACAAAATTAGCCAGACTAATCAGGCACCCACAGTGACCGAGCTTGAGAACATGGTCTGATACTGGCAGGCATTGATTCTGAAGATATTTTACTCCTatgtacagagagagaatgATTGTGCATAAAAAAAGAGGCATGTAGAGTCAATCACTTCTTCAACCAAATAAAGCACATCAATTTATTCAGCATAATATATTCCTAAGGCCCTGGGAAATTCAGAGGAACAGTCTAAAACTGCCATTTTTGTGTTagttattaagttattattcCAGTTGAAACCGGTAAGAGACTTTTGAGCACAATAACCATAACTGCTTAAATATGAAACCTACTTCAATAATTGGATACCATAAACACCATTCTATAAATTATACGCttaaatatacagaaatgtaatgtcctccaaaaacaaaataatacacacattatatgatatatatatatatatatatacacacattatatgatatatatatatatatatatatacacacacacacacacacacacacacacatatacttttttccccccatggaATAGATTCtttttttgtccattattttttttggtcagCATTATGAGGCAATATCTTAACTATCCTATCCTAATAGGATATTTCTAATAAGCTGGTAGTGCACAGTTTACCAAATAATTATGCTTTCATACTCCACTTCATTGGAATTCACTGCTTTAGGTTTTGATCACTAGGTCATTGACATTTTACAGGGCCTTGTGTATTACTGCTAGGGAAACTCTGATTATCATGTTAAGTGCACTTGGATATAGTCATATGAAGTCCacaataatgcaaaaatgattgGTTGGTTGACAGAACAAAATAGTTTTGAGCAGCTGTTTGGGGTTAAGGTTAATCAGCTACTCAGAACTGTTCAGCAAGGAAAAGGCATTTGCTTCAGGGGCATTGCACTTTGCTTTGCACCTcatgtaaaaactgaaaaatatattttcggTCTAATGATTCAAATTAACTTCTGAAAGAATGCAGTGTCTTCTGGATTCTGACTCAACCTAGCTCTAAGTTAATGAATTGGTCTAATTAGGTGATTTACTAGATCCAATTAATACTCTCTCCAGGCTGCaaataaaccacattttaaCTGTAATAGACCTTAATACAAAGTGATTTTATAACTCGCACAGCAGACAGTATTTGGGGAAAATCTGAAATTTAAGAGGAAAATCCTTCAGCCATCAAGGACCAGAGTTCCCTTGACTGAACAAGTAACTGGATTGCTAAATGGTTAAAATCTAAATGGTTGTTACTATGGGAATGTTTTTCCTCATGCTTATTAGATTGACCTTTTTTGAAAAGACTGGGGCTCTCTAGGACCAAGATTGAATGGAGTGAAGGAGATTGCATTAGTTAGTCAAGGTGATGGTGACAAGAAGCTGTAGACTAGAGGTTCCTTACTTATCTGTTGGCATCAGTGTTGGACAGAGAGCATTAGTGAGAGAAACCTGTAGTTTCTGCTGTGGGCACCTCCTCGGTTCACTTAGCGACTCTGCGGAGCTCAGTGAGTAGCCAAATGGCTAGGGTGAGCAGTGCCAGGGAGCCAGACTGGTGAGTGGCTGCCAGGGGTGTGGGCACATACATCAGCAGGGTACAGA
>TU179280
NNNttggttggttagataattgcattaatgagaaattgaacaagtgttcctaataatccttcaggtgagtgtatacatacacacacacacacacatatacttttttccccccatggaATAGATTCtttttttgtccattattttttttggtcagCATTATGAGGCAATATCTTAACTATCCTATCCTAATAGGATATTTCTAATAAGCTGGTAGTGCACAGTTTACCAAATAATTATGCTTTCATACTCCACTTCATTGGAATTCACTGCTTTAGGTTTTGATCACTAGGTCATTGACATTTTACAGGGCCTTGTGTATTACTGCTAGGGAAACTCTGATTATCATGTTAAGTGCACTTGGATATAGTCATATGAAGTCCacaataatgcaaaaatgattgGTTGGTTGACAGAACAAAATAGTTTTGAGCAGCTGTTTGGGGTTAAGGTTAATCAGCTACTCAGAACTGTTCAGCAAGGAAAAGGCATTTGCTTCAGGGGCATTGCACTTTGCTTTGCACCTcatgtaaaaactgaaaaatatattttcggTCTAATGATTCAAATTAACTTCTGAAAGAATGCAGTGTCTTCTGGATTCTGACTCAACCTAGCTCTAAGTTAATGAATTGGTCTAATTAGGTGATTTACTAGATCCAATTAATACTCTCTCCAGGCTGCaaataaaccacattttaaCTGTAATAGACCTTAATACAAAGTGATTTTATAACTCGCACAGCAGACAGTATTTGGGGAAAATCTGAAATTTAAGAGGAAAATCCTTCAGCCATCAAGGACCAGAGTTCCCTTGACTGAACAAGTAACTGGATTGCTAAATGGTTAAAATCTAAATGGTTGTTACTATGGGAATGTTTTTCCTCATGCTTATTAGATTGACCTTTTTTGAAAAGACTGGGGCTCTCTAGGACCAAGATTGAATGGAGTGAAGGAGATTGCATTAGTTAGTCAAGGTGATGGTGACAAGAAGCTGTAGACTAGAGGTTCCTTACTTATCTGTTGGCATCAGTGTTGGACAGAGAGCATTAGTGAGAGAAACCTGTAGTTTCTGCTGTGGGCACCTCCTCGGTTCACTTAGCGACTCTGCGGAGCTCAGTGAGTAGCCAAATGGCTAGGGTGAGCAGTGCCAGGGAGCCAGACTGGTGAGTGGCTGCCAGGGGTGTGGGCACATACATCAGCAGGGTACAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU179279 True 2330 lncRNA 0.35 2 21176344 21179745
TU179280 False 1210 lncRNA 0.39 2 21176344 21213391

Neighbor

gene id symbol gene type direction distance location
AMCG00003357 cutc coding downstream 30030 21143389 ~ 21146314 (-)
AMCG00003358 NA coding downstream 40964 21134071 ~ 21135380 (-)
AMCG00003356 abcc2,LOC102299438,LOC100708777 coding downstream 133011 21025457 ~ 21043333 (-)
AMCG00003355 abcc2,LOC103476915,LOC102299438,LOC101468212 coding downstream 180069 20992485 ~ 20996275 (-)
AMCG00003352 NA coding downstream 230540 20942756 ~ 20945804 (-)
AMCG00003364 NA coding upstream 311681 21525072 ~ 21725891 (-)
AMCG00003362 cunh10orf76,lg09h10orf76,LOC107714152,LOC107551381,LOC107588454 coding upstream 529898 21743289 ~ 21753048 (-)
AMCG00003368 pdlim1 coding upstream 553569 21766960 ~ 21775448 (-)
AMCG00003369 NA coding upstream 587639 21801030 ~ 21814784 (-)
AMCG00003366 NA coding upstream 604795 21818186 ~ 21866585 (-)
G142440 NA non-coding downstream 361146 20814899 ~ 20815198 (-)
G142439 NA non-coding downstream 362698 20813073 ~ 20813646 (-)
G142433 NA non-coding downstream 365693 20809958 ~ 20810651 (-)
G142421 NA non-coding downstream 404549 20770723 ~ 20771795 (-)
G142420 NA non-coding downstream 408714 20767354 ~ 20767630 (-)
G142533 NA non-coding upstream 34152 21247543 ~ 21248434 (-)
G142549 NA non-coding upstream 238284 21451675 ~ 21459233 (-)
G142570 NA non-coding upstream 548621 21762012 ~ 21762258 (-)
G142661 NA non-coding upstream 853562 22066953 ~ 22069982 (-)
G142663 NA non-coding upstream 871527 22084918 ~ 22085191 (-)
AMCG00003337 cnnm2b,borcs7,LOC107738473,LOC107708677,LOC107699104 other downstream 1299582 19802079 ~ 19876762 (-)
AMCG00003320 NA other downstream 1606729 19543637 ~ 19569615 (-)
G141826 NA other downstream 4427913 16748061 ~ 16748431 (-)
AMCG00003231 NA other downstream 6035525 15056643 ~ 15140819 (-)
AMCG00003214 phs,pcbd1,LOC107743500,LOC107601888 other downstream 6501924 14669415 ~ 14674420 (-)

Expression


Co-expression Network