G142556


Basic Information

Item Value
gene id G142556
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 21574114 ~ 21659778 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU179313
gcaacaaaggagtggctcaagaagaagcacattaaggtcctggagtggcctagccagtctccagaccttaatcccatagaaaatctgtggagggagctgaaggttcgagttgccaaacgtcagcctcgaaaccttaatgacttggagaggatctgcaaagaggagtgggacaaaatccctcctgagatgtgtgcaaacctggtggccaactacaagaaacatctgacctctgtgattgccaacaagggttttgccaccaagtactaagtcgaagggGCAAAACACCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU179313 True 287 lncRNA 0.49 2 21574114 21659778

Neighbor

gene id symbol gene type direction distance location
AMCG00003359 NA coding upstream 396584 21151851 ~ 21177530 (+)
AMCG00003351 morn4,LOC107719210 coding upstream 809429 20760320 ~ 20764685 (+)
AMCG00003348 NA coding upstream 980614 20492359 ~ 20593500 (+)
AMCG00003349 slit1,LOC107558211,LOC107753728,LOC107705008,LOC107699140 coding upstream 1165430 20403696 ~ 20408684 (+)
AMCG00003343 lbx1a,lbx1,LOC107585373,LOC107716305 coding upstream 1446558 20126144 ~ 20127556 (+)
AMCG00003363 NA coding downstream 93568 21753346 ~ 21755934 (+)
AMCG00003370 NA coding downstream 386535 22046313 ~ 22067314 (+)
AMCG00003371 NA coding downstream 475123 22134901 ~ 22144437 (+)
AMCG00003372 NA coding downstream 664054 22323832 ~ 22487911 (+)
AMCG00003374 NA coding downstream 1052114 22711892 ~ 22716708 (+)
G142482 NA non-coding upstream 430983 21103820 ~ 21143131 (+)
G142419 NA non-coding upstream 802335 20767354 ~ 20771779 (+)
G142412 NA non-coding upstream 824750 20745545 ~ 20749364 (+)
G142397 NA non-coding upstream 929320 20644481 ~ 20644794 (+)
G142376 NA non-coding upstream 974569 20595470 ~ 20599545 (+)
G142572 NA non-coding downstream 106563 21766341 ~ 21766544 (+)
G142580 NA non-coding downstream 141241 21801019 ~ 21806660 (+)
G142620 NA non-coding downstream 331734 21991512 ~ 21994674 (+)
G142664 NA non-coding downstream 431923 22091701 ~ 22094748 (+)
G142690 NA non-coding downstream 989162 22648940 ~ 22706530 (+)
AMCG00003324 NA other upstream 1915637 19651176 ~ 19658477 (+)
AMCG00003323 rnf122,si:dkey-51a16.9,LOC104925894,LOC103353499,LOC106606324 other upstream 1940964 19618881 ~ 19633150 (+)
G142172 NA other upstream 2037023 19535693 ~ 19537091 (+)
G142078 NA other upstream 2881910 18588574 ~ 18692204 (+)
AMCG00003291 bbip1 other upstream 3848733 17721244 ~ 17725381 (+)

Expression


Co-expression Network