G142580


Basic Information

Item Value
gene id G142580
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 21801019 ~ 21806660 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU179340
TTTTACAGACACAGGGTTGAAtaaagtttattaaatattgcataatACTGAATTCAGCACAGCAGTAAATAGATGctcttttttaattcattttgtgaaaTCATAAAGCACTGCAattagaagaaaacaacacaaaatgctgCATGATGTGTTTATAATGGGGTGCAGCATACAGAAAAtggtaaataaaaatgtattagaagCATTATGTTATATACAGTCAGCATACTGTAAACATTTCCATTAGATATATTAAAACTTGTGTTACGCTGCTAGGTGTGAGTAATATACTTTTTGGGGTATTCTTAAATTAGATAAAAAcaggcaaaaagaaaaatgatgcaAAATCAATAAACCATACATAATATGAGGACTACGGGGAACATGGTATCatgatatttaacattttttttagtgcatgtgtttttctgtgctaatacttgttttttatgttgtgtgCTTTGCAATCCTCCAGGTGAATAAATGGGTAAATTCAAAGAGCTCCATAACTGCCTTCTCTTTTTCTGTCACTTAAATTCCTctctattaaattattttctatacagGATAAGTACACATTctgtacaaaatcaaatatacatatttacaatcatACTTTTGCAGTTTTATAGTTCCATTCTTGTAGAAAGTCCACaacttgaaatgtgttttttctttttatgttttcaatatcCTGAAATCTGAAACTTCAAAATTTGCAAAACGAAATCTGAGTGTTTCAAACCCCAAGTTAAATATCTGAATGAACTAGAGGTCTGAACCTTGAAATCTGAGGCTgacactcaaaaacaaaaactgacagTCTGGTAGTTTTAACCAAGAGGGGGAAATAATCAGTTACTGTCTGGCCAATTTAAAAGATTGGAGAAGGGCTGTATTAtttgttgcaaaataaatacattgatgttGACATGTTTCCCATCAGGCATTATGGGATACTTTTGCATTTGTACTCAAGATTTCATCAACCAGCTCTAGTGTCTGACACCTTTCATATGTCATCTTGCGACTTTTGAAGTATCAGATTtagatttcattattatttgttttgttaatccAATgatctttgttttaaactttatttagattttaacaGGAATCCAACTCCTCTGAAGGTTTCCCTCTATCCACAAACAACCTCTGGGAACTGTGCTTTTCCATCTCACACTGATGAAGTTTGTCATGGCAGCTCctgcattttaatagtttttttttgttaaataaattctCTCTAAAAAAGTTATCAGCATAAAAAtaggtgtttatttatatttttaatgtcactttgtttttcttttcaactcTTAAATATGTTACTTATGTGACAAGAACAGCAGTCTAAACCATTAAAGAATGGTCTTAGCATTACAGAAGACATATTCAATCTAAAAATACTATAAGGAAGAATCAAGGGTTTCAGGCAAAGGATTAGGGGTGGGGGAATGCAGGTGTTTTCACTGGCAGTATTTGTTAAAAGCTGGTGTTGTAATGAAAGTATCCTTTCCTGTTTGTACattcttctttttcctttcaataGACCCTTCATCTTCAGCTTTAATCAGGAAAGATTTTCCACCGTTGCTCTGTTTGGAGATCTTACAATAGAAGTGGATGGCTagtccaaacaaacaaacaaacaatatctcCAGATTAAACCTGAATGACCAACACACAAAATTCCATCTTTAATGCTCCTCTTTTCATCCTACGGGTATGATGTCATCTGCTGACTACTGCAATGTCTCCAAGAAGAGGTTATGAGCCCTTAAGAAGTTAACCAAAATCCTTGATGTCAGCTTTCAGTGATATGAGCAGAACATGCATCTGGTGAAAATGAATTTCAACAAATAAGTTTTCAGTCTTCTGATGTGTTTCATGGCTGCAATTAAACCACTGAAGGTGGCATCttaatctgttttaatgtgCAGCCATATATCtgcacaatacaattaattttggTTATATAAAATGCTTTCCTCCTTGTAAGGGAAAAATATGAAGATTTGGAGTATAAGTCTACTTAGACACTTTTTTCCCCTATGGTTACTTCTAAGAAATATcttttcatatattcatatacattttgtcaAACTATCTTCACTTCAGACTCAACTGGCAGTCTTGTGACCTGCACACAGTCCTACAGTATCACAAGGTCTGACAAAAActcgttttgttgttgttgaaaggTGCAAAAGGCAGTCTCATTTAGTTTGCACAAAGTCAAGCCAGTGTAGCAAGCAAAGTGATATTGTGTAACAGACAGAAAAGTTTAGGCCATAAATCCTCAGCTGCCTGTTTTTTGTGATTGCAGTCTGGCACATCATCTGAAACAGAGAAAATGATCGCACTTCTCACATGAACCTCTTACCATATATTCACATACCTCACACATTTTTACTTCGCTCGCCAGCTCAACAGTTAAGAAAGGTGTAttcatataacatttttttttctttttcttttttctttcaaaaagtAATGGTAGTTAACAGGCTGCTGGGGGATGCTGCTTATTATATTAGTGTCCATTTAGAAGAGCAGTGTTTACAAGTGAAGAGGCTTCACATAGTTTCCAGTTCATCCTCATTCTGTGGCACGTAACTGTACAGGGCTTGGAAGCTAGAGGTTAAGACACACTATACTTAGAATACACAACATTCAAGTTTCCTGTCACAATCTGTTTAAATCCTTCAtttttacaataacaaatatattaccAAGCAGTGTGTAACCACCATTGATTACAAATCTTcaatatactgtacaaaatTCAACCTATATGAAAAGAACACAATCTCCTTGGCTCATTCAAGTACAGCATCTAATACATTTGTGGAGTATACTGGATTTGACATCAGGTATTGTAATCATTAAGCTTAATATGTGGGGACTTcattaaagtcttcaaaatcatgaaaggcatttgaccacatcaaaccagaggagcttttccacatCTGcaagggacacacggacccggggacatgaatggaaactgggcttcaaggcattcaagacagaaaacgggagacactgcttcacacagagagtcatgacaatctgaaacaaactccccagcgatgtggttgaagcccacaatttgggaacattaaaaaatagaatggataggatccttggatcacttagttattaatggacaccaaatgagcatgatggggtgaatggcctcctctcgtttgtaaactttctaatgttcttaacAAAATGCCAGAAAAGTATGccaatatttgtttgtattcttaGGCTAGgtgtaaatcaaaacattaattcacCAGCAAATAGCAATCTTAACCCAgtacttttttaatgtgtggaAGAAAGAATTCTATGGCAAAACCAAAAGTTGCCAGTGTTTAATTTGCCTTTAACAggtgtataaaacatttaatttaatccccATATAAATCCATAATTGAGATTAATCCATTGCAGGAAAATGCAATCACATACATTTCAACTGACATTaaatccttatttatttattgtaattaatttgccCCCACTCAGCCACTTGGCAGCCTTTCATGTAAACAGACATTAATATTTCTGCTGAAGGAGGGAGAATTAAGACCAATATCTTTTGATTCTGACCAATTCTATCATTTTAGGAATtatcaaataatgtaatttaatgattCCCTGCTTTCTCTGCTGCAGAAGCCGGTTGTTGAAATAGTCCATGCCAAGTTAAAGATTCTAAGCATTGGCAAACATATTCAGACAGCAACTTCTGTCTTAAGAAGAAAAATGCCCAAAAAAGTTTAGTGCGATGTCAATGTCCTTCAGTGAGcctgaaaataatgtgtaagGAATTGTGGAAGTCATACTCACACTTCACAGCTGGTCTGGCTCTGATCAGGGCTGCTCCCACGCTGCTGAGCCTGGGGTTGCTGAGAAATGATGAAAGATTGTTTACTGTGATTAGAAGGCAGTCTATGGGTAGAGTCAAGCGGGTGTGAAAGGGTGCTGCAGTAATGGACGGACTTTTCTGCAATATTCATGATCTCATTGCAGACTGCATCCTGGGGAGCAGACATGGCACACACATACGGAGAGAAGACGAAGTACCGGCCGAAGTGTGTTGTCCCCCCACCCATGAAGACAGTCAGCAAGAAAGAGATATGAAGTTTGGGGCAGGTTAGAAGAAGGAGGAAGAACATTCCAGACGCATCATTTCAGTCCAGTAAGTAATAACAccgggagggggagggggtccGTTAAAACCAGGGTGGATGAAGGAGGAATCCATAGGTAAGCATGGAAAACAGGCAAGAATAAGATTAAGTGCACATAAAATCATCAATGAAACTGAAAAGTGCAGCACCACACCACACAATGACTGAGCAATCAGGGAGTTAAACAGATGCAGTTAAGGCTCCTGTTGACTGATTGAGGACATGCAGTCAGTAGAGTGGGTTATTAATCAGCAAAGCGAAATAGACACTGATACATTACAGCCAGTTTTCCCCACACTGCTGGAGCGCAACTGAGATAAGGTTTTATAGAAGCTTTGCAGTCAGTTAAAATCAGTAAAAagttgcattgcattttatatcGGAGGACTGAGGCATGATGCAGGTACACTATGGTACACTTAACATTCAGCTGTTCACTGTCTTTCATCACTTAtggtacaaaaacaaatgttctacACAAATATCACAACTCAAATTGACTACAGTGTATTGTCACTGTAAAGCAGTTATATCTACTATTAGAATGCTTTAGATATGTTCGAAACATTATATCTATTATCTGCattattagtttgtttctgtaaaaaatGTGCTTGATGCTTTATAGTATTAGGATACTTGGATCCATATTTACTCAGCATTTGCCGCAAACAATTTCCTTTGAAATCAGAAAATTGAGGGAACTTTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU179340 True 4931 lncRNA 0.36 2 21801019 21806660

Neighbor

gene id symbol gene type direction distance location
AMCG00003363 NA coding upstream 45085 21753346 ~ 21755934 (+)
AMCG00003361 NA coding upstream 52418 21525637 ~ 21748601 (+)
AMCG00003359 NA coding upstream 623489 21151851 ~ 21177530 (+)
AMCG00003351 morn4,LOC107719210 coding upstream 1036334 20760320 ~ 20764685 (+)
AMCG00003348 NA coding upstream 1207519 20492359 ~ 20593500 (+)
AMCG00003370 NA coding downstream 239653 22046313 ~ 22067314 (+)
AMCG00003371 NA coding downstream 328241 22134901 ~ 22144437 (+)
AMCG00003372 NA coding downstream 517172 22323832 ~ 22487911 (+)
AMCG00003374 NA coding downstream 905232 22711892 ~ 22716708 (+)
G142572 NA non-coding upstream 34475 21766341 ~ 21766544 (+)
G142556 NA non-coding upstream 141241 21574114 ~ 21659778 (+)
G142482 NA non-coding upstream 657888 21103820 ~ 21143131 (+)
G142419 NA non-coding upstream 1029240 20767354 ~ 20771779 (+)
G142412 NA non-coding upstream 1051655 20745545 ~ 20749364 (+)
G142620 NA non-coding downstream 184852 21991512 ~ 21994674 (+)
G142664 NA non-coding downstream 285041 22091701 ~ 22094748 (+)
G142690 NA non-coding downstream 842280 22648940 ~ 22706530 (+)
G142722 NA non-coding downstream 994192 22800852 ~ 22801060 (+)
G142724 NA non-coding downstream 1021441 22828101 ~ 22828463 (+)
AMCG00003324 NA other upstream 2142542 19651176 ~ 19658477 (+)
AMCG00003323 rnf122,si:dkey-51a16.9,LOC104925894,LOC103353499,LOC106606324 other upstream 2167869 19618881 ~ 19633150 (+)
G142172 NA other upstream 2263928 19535693 ~ 19537091 (+)
G142078 NA other upstream 3108815 18588574 ~ 18692204 (+)
AMCG00003291 bbip1 other upstream 4075638 17721244 ~ 17725381 (+)

Expression


Co-expression Network