G142620


Basic Information

Item Value
gene id G142620
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 21991512 ~ 21994674 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU179383
atatatacttatagTAAATTAACTATACAGCAACAATGCCTATAGACCATTTTTACATGGATAGCCATAGGATTAAGTAtactgcatataaatatatgcaaatgaaaacatgcatacacaaaTTACAGTCAAGCTTCACAGACTTGATATGaaccatgtttgttttgtaaaagtgTAGTTTTAGTTGTAGTAGTTGAAATTGGCCTGTTatcattaaatatgtaatttcatttaaattttacaTTATAAGGGGATTCATCACCTATCTacatattgttgcattttcaagtaaataaacattcctttataaaatattttaaactcaaaaaagtataatacataattagtGCCTATGAGGAATACACCTGAGATCAGCATGTTGCACATTTTAACAGCTGAATTTTACATATttggtattatatatatatatatatatatatatatatatatatgcatgtatatgtatgtataaacactaccggtcaaaagttttagaacatccccatttttccagtttttattttccagttcaagtccagtgaataaggtaagggtaagtggtaaactgccagagatttaaaaaaaaagtttaggttaccaaaaactgaaaaataatgtacatcacagaatgcttcacatcattaaaaagctgagagtctcagctttcatgggacaCCAGAttggtttgtcagcttaaggggttaaatattgttaaacaaaatgattccatgatttattgtttatctacaattgtttatttgatctatgctttaatttcagagtacactgagacattaaacagtgtaaatttcaataaaaactggaaaaattgaccagtagtgtgtgtatatatatatatatatatatataatattatatacatatacatacatatacatacatacatacatacatatacacacacacacacactactggtcaaaagttttagaacacctcaaaaGCAGACTGTGCATTTACCTCCTGGGCTCGgaatgacggcgggcgacacagaaactgtaaatcagaggtgtttgagaatgaaacacgctggtagccaagagaataaacTTTCAAATGACATGCagattgtaggaatacagtgtaacttctatgcacaggagctgcgcgtaacactgccaaataatgcttaagagggtgtatatacacagtatataactctgaaatgtacattatttttcagtttttggtaacctaaacttttatttttaccctctgtcagtttaccacttacctttgtaccatttcaggttattcactggtcttgaactgcttaaatttcaataaacaattgaaaaatgtgGGTGTTCTACAACTTTTGACTGgcagtacatatatatgtgagtatatgtatatatacacatacatacacatatacatacctacaaacacacacacatctcatttcacttttttcttttaaagacaatttccatcaataaataaaggtttaGCATTTAgcaacttatttttaaatgtgctaaaaaaaaaatccacttttACCAATGTTAGGATGACATCAATGAGAGTGAAATTCAACCCATTGCCAGTCTCTGATCCAGTTCCACCACGGTTCACCTTCACATgctcaaaaatatatttttccctctCTTACACCAGCTGGATTTGTAGTTGGATGTCAGCTTAATTTCTTTTACAAGTTCTGCATGTTGCAAAAAGCAATCCACAGTGCTTGTAGATTCCTTGTCATTTGAGCTAAAGCCTCTGTATTAGCATATACcataatttaaatttagacACGTGGCCAAAAAGAGAATTGGTGTAGTCACTGAGCATTGTTGTTGCCAGTTCCATTGTTTTCAATGGCATTGGTAGGGCTTATCGTATGAATACCATCTTGCTGTAGGGTGTCTCTCCGTGGAGGCATTCTCTCGTTGATTCTGTCTAAGCCTTTCGCCTCTTCAAAACTGCAGATTTTATGTTGTGGCGAGAATCCTCGGATCgcttaacaaaatgcaaattggaTGAGTGAGTGATGGAAATACAGTTGGAGGAGGGGATTGGGGTAGAGGGAACAGTAGGATGGCAAACTAAAACATATGAACAAGGTTAACCTGTATCAGTGCTGATAGATTACCTAAACAACTGTCATATTGAGTTAATCTTTCTGTAaacacacagattttttttttttgtgtgtgtatatatttttatattttatgcacGGATGTGCCTGAATGATATAAAGGAAACATTGCA
>TU179384
taaCTTGACTACactttacaaattaataataataaaaaaatcatacaatttATAAATCCATAAAgttttcacttttattattcCAGTTACTGTTTTGCAGAAGGAAtgcagaaaattaaataataattttacacacttttttttggttACTAATGTTTGTGTTGCTCTGGATTTAAAACCAAGACTATTTCCATTGACATAGTGTATATTTTCTCAAATACACTGTAGAAACCTGTACATCACTAAGATAAAACACACTGACTGGTCTCACTTACAGATCATCAGAAATAACTCCACACATTATTAAGAGCAGCTGCTCATGCAGATAATTTATTGTGTGCTactgtttttataaaataattgaggAGTTAACATGCATGCTTGTTTCAGacattatgtacattttgtgcATCAAGAGCAAATAAGAGATGAATTTGGcgaaatataaaatgattcaATTTGTGTTCCAGGGgatgagagaaataaataagttagtaaaaaaaaaaagtatatgaaaaaatattaaatacagggGAGCTCAGTACAGTTAGTTAGCTGCTTCTGGACACAtccatttataaacattttacatttggacatttaatttaatctaacCAAGCATtttagttattgttattttgtacatGCAATCTCTGGTAGTACACTTgcatttgattgttttacaCAACCTGactgtattgtgtttgtgttagtgtgtgtatatatatatatatatatatataatattatatacatatacatacatatacatacatacatacatacatatacacacacacacacactactggtcaaaagttttagaacacctcaaaaGCAGACTGTGCATTTACCTCCTGGGCTCGgaatgacggcgggcgacacagaaactgtaaatcagaggtgtttgagaatgaaacacgctggtagccaagagaataaacTTTCAAATGACATGCagattgtaggaatacagtgtaacttctatgcacaggagctgcgcgtaacactgccaaataatgcttaagagggtgtatatacacagtatataactctgaaatgtacattatttttcagtttttggtaacctaaacttttatttttaccctctgtcagtttaccacttacctttgtaccatttcaggttattcactggtcttgaactgcttaaatttcaataaacaattgaaaaatgtgGGTGTTCTACAACTTTTGACTGgcagtacatatatatgtgagtatatgtatatatacacatacatacacatatacatacctacaaacacacacacatctcatttcacttttttcttttaaagacaatttccatcaataaataaaggtttaGCATTTAgcaacttatttttaaatgtgctaaaaaaaaaatccacttttACCAATGTTAGGATGACATCAATGAGAGTGAAATTCAACCCATTGCCAGTCTCTGATCCAGTTCCACCACGGTTCACCTTCACATgctcaaaaatatatttttccctctCTTACACCAGCTGGATTTGTAGTTGGATGTCAGCTTAATTTCTTTTACAAGTTCTGCATGTTGCAAAAAGCAATCCACAGTGCTTGTAGATTCCTTGTCATTTGAGCTAAAGCCTCTGTATTAGCATATACcataatttaaatttagacACGTGGCCAAAAAGAGAATTGGTGTAGTCACTGAGCATTGTTGTTGCCAGTTCCATTGTTTTCAATGGCATTGGTAGGGCTTATCGTATGAATACCATCTTGCTGTAGGGTGTCTCTCCGTGGAGGCATTCTCTCGTTGATTCTGTCTAAGCCTTTCGCCTCTTCAAAACTGCAGATTTTATGTTGTGGCGAGAATCCTCGGATCgcttaacaaaatgcaaattggaTGAGTGAGTGATGGAAATACAGTTGGAGGAGGGGATTGGGGTAGAGGGAACAGTAGGATGGCAAACTAAAACATATGAACAAGGTTAACCTGTATCAGTGCTGATAGATTACCTAAACAACTGTCATATTGAGTTAATCTTTCTGTAaacacacagattttttttttttgtgtgtgtatatatttttatattttatgcacGGATGTGCCTGAATGATATAAAGGAAACATTGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU179383 True 2241 lncRNA 0.33 2 21992414 21994674
TU179384 False 2114 lncRNA 0.34 3 21991512 21994674

Neighbor

gene id symbol gene type direction distance location
AMCG00003363 NA coding upstream 235578 21753346 ~ 21755934 (+)
AMCG00003361 NA coding upstream 242911 21525637 ~ 21748601 (+)
AMCG00003359 NA coding upstream 813982 21151851 ~ 21177530 (+)
AMCG00003351 morn4,LOC107719210 coding upstream 1226827 20760320 ~ 20764685 (+)
AMCG00003348 NA coding upstream 1398012 20492359 ~ 20593500 (+)
AMCG00003370 NA coding downstream 51639 22046313 ~ 22067314 (+)
AMCG00003371 NA coding downstream 140227 22134901 ~ 22144437 (+)
AMCG00003372 NA coding downstream 329158 22323832 ~ 22487911 (+)
AMCG00003374 NA coding downstream 717218 22711892 ~ 22716708 (+)
G142580 NA non-coding upstream 184852 21801019 ~ 21806660 (+)
G142572 NA non-coding upstream 224968 21766341 ~ 21766544 (+)
G142556 NA non-coding upstream 331734 21574114 ~ 21659778 (+)
G142482 NA non-coding upstream 848381 21103820 ~ 21143131 (+)
G142419 NA non-coding upstream 1219733 20767354 ~ 20771779 (+)
G142664 NA non-coding downstream 97027 22091701 ~ 22094748 (+)
G142690 NA non-coding downstream 654266 22648940 ~ 22706530 (+)
G142722 NA non-coding downstream 806178 22800852 ~ 22801060 (+)
G142724 NA non-coding downstream 833427 22828101 ~ 22828463 (+)
G142727 NA non-coding downstream 899174 22893848 ~ 22894101 (+)
AMCG00003324 NA other upstream 2333035 19651176 ~ 19658477 (+)
AMCG00003323 rnf122,si:dkey-51a16.9,LOC104925894,LOC103353499,LOC106606324 other upstream 2358362 19618881 ~ 19633150 (+)
G142172 NA other upstream 2454421 19535693 ~ 19537091 (+)
G142078 NA other upstream 3299308 18588574 ~ 18692204 (+)
AMCG00003291 bbip1 other upstream 4266131 17721244 ~ 17725381 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1440155 NA non-coding NC_048581.1 CM023235.2 32939343 ~ 32939760 (+)
tiger barb (Puntius tetrazona) G86984 NA non-coding NC_056710.1 CM032079.1 9654959 ~ 9655277 (+)
mexican tetra (Astyanax mexicanus) G95542 NA non-coding NC_035906.1 CM008309.1 34092200 ~ 34097088 (+)