G142661


Basic Information

Item Value
gene id G142661
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 22066953 ~ 22069982 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU179460
ggcaagtaaaaatgcaatgttttacagaaaacaactgaaaaaaagtgtcacaaaacaaaaatccctagaaaaaactacaacaaaaataaatcacattttattgtttaagaTCAGCAACTTAACAACatgcaatacattaaacaaatctggTGAgtgaacaaattattattaacatgtacTTATCTAcaacctttgttttgtttcagtttactGGCAGCTTAACACTGTTACAATGAAACTTGTGCATGTGTACAGCTATCACTCGAGTGACACTGTGCAAGGGAGGACATCAATGTATCACAGTGTCTGTACTGTTAAATTGAAAGAATGATACATTCCCTGGGTGTGGACATTGACTGCAGATATTGAAAGGACATTAAACGGTCTGAGGTTTTCATCATATTAATCAATgcctgttaaaataaattaaagtcacTTTAAATActtccattttcaatttttataatGAACCCTCCTGGGCTGTTCTTGATTATATACACAGCCACAATTGCTATTAGATCTCAGATGAGGAAAGTTCAGCTTTCACTTCAATGCAAGCAGCAAGCAGGTAATTGTTGTAACTTAAAAATctgattgtaattaaaatatactcaGAATTCCAGCTGTGACAATAAGGGAATTGTCAATATGAAGTGCCACATACCTCCTGGGACCAGAACTCTCAAGGGCATATGTCATTTTCCCATACACTACCCACATATACATAACTTTTTCAACTTATAACACTGAAGCCTATCCTAACAAATGTAAGCTCACCTTTTACTATCAGAGGCCCATCAAAACCTGTAATTTATGATTTGAATCAAAACAGTCAAATCACAAATGGTTGCATCTGGAGGACAAGCAACATTCCCCAGGGCTTATTCTGAAGTGGTATACAGTgcgaatatgtggaaagagttgaaaattgctgttcaccaaaggtccccatccaacttgattgagcttgagcaattttgcaaagaagaattgggtaaacattgctgtgtccagatgtgcaaagctggtggagacttatccacatccacaaatattgactgaagggggtgattacttatgcattcaattattttttgttttgtatttgtattcatttcgaacaatttgcagattatatttttttgatttcatgttgtaacacaatgaaatgtggaaaagtccaaggggggtgaatacttttgagagccactgtattaTAATTGGGGACAAAACTATTAGCAAGCCTTAGTTTGCTAAtggaaaccaaaaataataaaagggaaCAGCTGAGaattaaatgaacaacaatacTCTGGTTTAGAAATTTTAATGAAGGAATAAAATGTTCTATAAACATTTGACAAACATAACTTTACCTACAAATATTTAAGTTCAATGTGTCTAAATTTGTAAATAGagacatatacacagtatttgTTCTAAGTTACAGAAAATAACTAGTTACAGAAGAAATAATTACACCTTCCTTCAGTGTCCCTACTTTCAGTTTTCTTGAATAATACAGCTTTGGATTGTCTGTAATGCAAGTGattgaaaacatatattaataagGCTAAAACATGTAATTGATCTCTACACCTGGAGATGTGaaatattgtacatattgtagATTGtgttctttttactttttagacACAAGCCTTTATAAGCATATTCAAAATGTTGTACTTCAATGAACCATAGTAATTCTGACAGCTTTAGAACTTTTACAGGAACTATCCTAAATGGAAATGTACCACAAcagatttgcagatattttgCAGTTTCCCTGTGGTTTTTCACTTTCATGtttcactttgcatttcagcaccttactgtggttttaccatgCACCACTACAGTAAAACTTTATCAGagtgtactatactatactatgaatattaaatattatggGACTGTAAATTCTAATAATACTCTGGGGatgaaattaaacatattattacaaagagtaattttaaaaatacagtaatacttttcaaaatttaaaatataaaatatggtgCATAACACaggaattatgtttttatatatgatacatttacatttttacaaaactcTCCAAACAATTTAAAGTATTAGGAATGTCTCAAATTCCATATTATGAGAAACGTTACTGAACCTCAGCTTTGTCAGGCTTTAAgacaagcaaattaaatgtgtttaattaatcttagataaaaaaaatatatatcttttctTGATTAAGCTCAATGAATATGTACCAGTGCAACAGGTTATTGGGTACCAAACAGATTGGAAGAACATTTACAATTCCAATCATagttacatataaaaacatgcaaatcagcaattaattaaatgtataatttaaatattttttaatttaggtaCACTAGCAATTAGATCCCTCCAATATACTGTTAAAATTTCAATAGTAAATTATTTAgattgtaaacacacacacacatatatatatataaacaactgACAAAAACTTAATGTTCAATCCATTCTGtagaaaacatttgtaaacTCTGAATCTATACACTTTGCTGCACTCTGGGTTTTCAGACCTCAGGCAAAGATGACAAGAGGACATTTGGAGACCTTTTAGTTTGTCCCAGAGGAAATCAGGGATGGGATGAATTACCGTGTTCGCCGTGGGATAGGTGGAGGTGGACTGTACTCACGAGCAGGTGGGACAGGTGGAGGTGGGCTGTGTTGACGGGCAGGTCTGATTGGTGGAGGTGGGCTGTATTGACGAGCAGGCGGGACAGGTGGAGGTGGGCTGTGTTGACGGGCGGGTCTGATTGGTGGAGGTGGGCTGTACTGACGGGAAGATCTGATTGGTGGAGGTGGGCTGTACTGACGGGAAGATATGATAGGTGGATGTGGTCTGTTTTGATGGGCAGCTCTGATTGGTGGAGCTGGGCTCTGTTGATGGATCAGCGACTGGGGGACTGTAGCCGGCAGACATGGATTGTAGAGCTCAGGAATGTAGCGATCTTGAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU179460 True 2994 lncRNA 0.35 2 22066953 22069982

Neighbor

gene id symbol gene type direction distance location
AMCG00003367 LOC107084148,LOC107376893,LOC102788851 coding downstream 46939 21994244 ~ 22020014 (-)
AMCG00003365 NA coding downstream 76533 21968705 ~ 21990420 (-)
AMCG00003366 NA coding downstream 200368 21818186 ~ 21866585 (-)
AMCG00003369 NA coding downstream 252169 21801030 ~ 21814784 (-)
AMCG00003368 pdlim1 coding downstream 291505 21766960 ~ 21775448 (-)
AMCG00003373 NA coding upstream 34145 22104127 ~ 22108082 (-)
AMCG00003375 NA coding upstream 762207 22832189 ~ 22833510 (-)
AMCG00003377 NA coding upstream 910518 22980500 ~ 22985638 (-)
AMCG00003376 NA coding upstream 915690 22985672 ~ 22986067 (-)
G142570 NA non-coding downstream 304695 21762012 ~ 21762258 (-)
G142549 NA non-coding downstream 607720 21451675 ~ 21459233 (-)
G142533 NA non-coding downstream 818519 21247543 ~ 21248434 (-)
G142531 NA non-coding downstream 853562 21176344 ~ 21213391 (-)
G142440 NA non-coding downstream 1251755 20814899 ~ 20815198 (-)
G142663 NA non-coding upstream 14936 22084918 ~ 22085191 (-)
G142665 NA non-coding upstream 21719 22091701 ~ 22094628 (-)
G142709 NA non-coding upstream 632600 22702582 ~ 22706511 (-)
G142725 NA non-coding upstream 758090 22828072 ~ 22828460 (-)
AMCG00003337 cnnm2b,borcs7,LOC107738473,LOC107708677,LOC107699104 other downstream 2190191 19802079 ~ 19876762 (-)
AMCG00003320 NA other downstream 2497338 19543637 ~ 19569615 (-)
G141826 NA other downstream 5318522 16748061 ~ 16748431 (-)
AMCG00003231 NA other downstream 6926134 15056643 ~ 15140819 (-)
AMCG00003214 phs,pcbd1,LOC107743500,LOC107601888 other downstream 7392533 14669415 ~ 14674420 (-)

Expression


Co-expression Network