G142665


Basic Information

Item Value
gene id G142665
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 22091701 ~ 22094628 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU179466
caaggcaacaaaggagtggctcaagaagaagcacattaaggtcctggagtggccttgccagtctccagaccttaatcccatagaaaatctgtggagggagctgaaggttcgagttgccaaacgtcagcttcgaaaccttaatgacttggagaggatctgcaaagaggagtgggacaaaatccctcctgagatgtgtgcaaacctggtggccaactacCTCTGACCTCTGT

Function

GO:

id name namespace
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:1902495 transmembrane transporter complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU179466 True 230 lncRNA 0.50 2 22091701 22094628

Neighbor

gene id symbol gene type direction distance location
AMCG00003367 LOC107084148,LOC107376893,LOC102788851 coding downstream 71687 21994244 ~ 22020014 (-)
AMCG00003365 NA coding downstream 101281 21968705 ~ 21990420 (-)
AMCG00003366 NA coding downstream 225116 21818186 ~ 21866585 (-)
AMCG00003369 NA coding downstream 276917 21801030 ~ 21814784 (-)
AMCG00003368 pdlim1 coding downstream 316253 21766960 ~ 21775448 (-)
AMCG00003373 NA coding upstream 9499 22104127 ~ 22108082 (-)
AMCG00003375 NA coding upstream 737561 22832189 ~ 22833510 (-)
AMCG00003377 NA coding upstream 885872 22980500 ~ 22985638 (-)
AMCG00003376 NA coding upstream 891044 22985672 ~ 22986067 (-)
G142663 NA non-coding downstream 6510 22084918 ~ 22085191 (-)
G142661 NA non-coding downstream 21719 22066953 ~ 22069982 (-)
G142570 NA non-coding downstream 329443 21762012 ~ 21762258 (-)
G142549 NA non-coding downstream 632468 21451675 ~ 21459233 (-)
G142533 NA non-coding downstream 843267 21247543 ~ 21248434 (-)
G142709 NA non-coding upstream 607954 22702582 ~ 22706511 (-)
G142725 NA non-coding upstream 733444 22828072 ~ 22828460 (-)
AMCG00003337 cnnm2b,borcs7,LOC107738473,LOC107708677,LOC107699104 other downstream 2214939 19802079 ~ 19876762 (-)
AMCG00003320 NA other downstream 2522086 19543637 ~ 19569615 (-)
G141826 NA other downstream 5343270 16748061 ~ 16748431 (-)
AMCG00003231 NA other downstream 6950882 15056643 ~ 15140819 (-)
AMCG00003214 phs,pcbd1,LOC107743500,LOC107601888 other downstream 7417281 14669415 ~ 14674420 (-)

Expression


Co-expression Network