AMCG00003393


Basic Information

Item Value
gene id AMCG00003393
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 619566 ~ 627690 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003393
GTTATCTTCAGGAAGCCTACCTGTGGATGAAGCAGGTCCTAGCAATCATGGAAAAATCCCTGGTCCTCCTGCAAGATGTCACAGATGGATCATTGTATGAAGGAGTGGCCTATGGGACCTACACCACCAGATCACTCTTTCAGTACATTTTTCTGGTGCAGAGACACTTTGACATTGCCCACTTTGATCACCCTTGGCTTAAAAAGCACTTTGCCTTCTTATACAGGACTATCTTGCCAGGGTTTGAAAGAACTGTAGCCATTGCAGACTCCAACTACAACTGGTTCTATGGCCCAGAGAGTCAGCTGGTTTTCCTGGATAAATACGTAATCCGTAATGGCAGTGGCAACTGGCTTGCAGAGCTGATCCACAAGAACCGAGTGGTGGAGGGACCAGGACAGGCAGGAAAGGGACAGAGgtATGATTCAAATTTAAGTTCTACACCGCCTCCAGATTTTGGACAATCCAGAATGCATTTCTTTGAGGATTGGGGTGTTGTGACCTATGGAAGTGCGCTACCAGCAGGAATTAACAGAACATTCCTCTCCTTCAAATCTGGAAAACTGGGAGGTCGTGCAATATACGATATTGTACACCAGAAGAAGTACAAAGATTGGATAAATGGCTGGCGAAACTTTAATGCTGGCCATGAACACCCTGACCAGAACTCCTTTACATTTGCACCCAACGGTGTGCCTTTCATTACTGAAGCACTCTATGGACCAAAGTATACTTTTCTCAACAATGCTGTCATGTTTTCTCCTGCTGTTTCAGACAACTGTTTTGTACCGTGGGAAGGGCAACTGACAGAAAACTGCAATTCTAAATGGCTCAAATATAAACATGGAAGTGCTGCTGATACACAAGGAAGAGTACTCGCAGCTATAGAAAGCAATGGGTTAGTATTTATTcaaggagaaggaaaaggtgCCTACAATTCTGATCTGAAGATAAAGAGCTTCAAAAGGAACCTGCTGCTTCTACATCCACAGCTGTTGCTCTTGGTGGACCAAATCAACTTAGAGAAGGACAGTCCAATAGAACAAATGAGTAGCTATTTCCATAACACTGACTTGCCTTTTGAGGAAACTGTGATAGATGGTGTTCATGGAGCACTTATCAGGCACAGAGgtgaattatataaaatgttctgGATGGATGATACTGGCTATAGTGATAAAGGGGTCCTAGGATACAGAAGGTACCCTCCTGGATACCCTTATGATGGATCTAACTATGTGAATGTGACAATGCCTCTGAAAAACCCTATTACCAGAGGAGCTTACATCTTCTTCGGACCGGATGTGGATGTTCAGAGCTTCAGCATTCGTGGGGATGCTCAGCGAGTAGATATTTATTTGGCCACCAGTGAGCACACATACACGGTCTACCTCCTCACAGGGGAAGTTACCAGCAAGCCTCTCTTTGCCATGGTGCTCCTTGACCAGAAGAAAATTGTCTTTGAGAAGGAGGCAGGTGTCAAAGACAGTCCACCAGTTGAGGTAGAGGACCATGTTAGTCTAATTGAAGATCATCTCCAGCATATTAAACCTGTCTTCCAGCAGCTAGAGAAGCAAATCCTGGCTCATGTCCTCAATACTGATAACTTCAAGAAAACAGCTGAACGCCTCTTGCAATTTACTGACAAGAAGACGACAGAGGAAGTcattgaaaaaatgttttccctgtCAGGGAAGCAGAACAAGAATAAAAACTCAAAGAAAGGAAGCCTTAATGACAAACTGTCTGAAAGCCTTCCCGATATTTTCGCTCAGATTGAGGTGACGGGCATGAAGCACATGTATGAAGAAAACCTTGAGGAGGGGGACGCTCAGACTTTCGTGGATTATGGAGGTCTTCGTTATCTAAAAGGCAGGAAAGGTGGCTTTGTCAAAGGACGCAGTTATAAAGAAGTTCACATGATTGCCACTGTCAAAAGTACTGACCCCTCAATCTCTGCCTCCTACATAAGATTGTTCctaattttaaacattgctaCCTTCTTCATGTTGTTGGCTTTATTGCTGACTCGATTTCAGAAGACTCAAAGTCTACACACTCAGAGGTGTTTCTATGGAATTCTTCTCATTGACAGCTTCAtcctattgtgtttatattCCTCATGTTCACGAACACAGTGC

Function

GO: NA

KEGG:

id description
K01794 DSE; chondroitin-glucuronate 5-epimerase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003393 True 2141 mRNA 0.44 3 619566 627690

Neighbor

gene id symbol gene type direction distance location
AMCG00003392 NA coding downstream 22388 594275 ~ 597178 (-)
AMCG00003391 gpr63,LOC106571327,LOC106607724 coding downstream 79825 538794 ~ 539741 (-)
AMCG00003390 NA coding downstream 379053 232621 ~ 240513 (-)
AMCG00003389 LOC108441044 coding downstream 542058 62457 ~ 77508 (-)
AMCG00003394 NA coding upstream 32838 660528 ~ 664276 (-)
AMCG00003399 NA coding upstream 43671 671361 ~ 802713 (-)
AMCG00003401 NA coding upstream 291622 919312 ~ 930578 (-)
AMCG00003402 NA coding upstream 440349 1068039 ~ 1216767 (-)
AMCG00003403 NA coding upstream 616864 1244554 ~ 1246054 (-)
G112 NA non-coding downstream 3246 614191 ~ 616320 (-)
G103 NA non-coding downstream 60832 519101 ~ 558734 (-)
G89 NA non-coding downstream 133666 485584 ~ 485900 (-)
G122 NA non-coding upstream 107076 734766 ~ 769986 (-)
G188 NA non-coding upstream 405970 1033660 ~ 1035682 (-)
G212 NA non-coding upstream 514548 1142238 ~ 1158563 (-)
G257 NA non-coding upstream 960127 1587817 ~ 1588261 (-)
G263 NA non-coding upstream 1086887 1714577 ~ 1714856 (-)
AMCG00003400 abracl,LOC107727609,LOC107558932,LOC107553474 other upstream 317533 945223 ~ 957196 (-)
AMCG00003423 NA other upstream 1769952 2397642 ~ 2401895 (-)
AMCG00003422 NA other upstream 1799707 2427397 ~ 2438821 (-)
G531 adck3,coq8a,LOC107602173,LOC107675039,LOC107727627 other upstream 2766967 3394657 ~ 3430272 (-)
AMCG00003444 NA other upstream 2908482 3536172 ~ 3538967 (-)

Expression


Co-expression Network