AMCG00003407 (nmbr,LOC106607916,LOC106571412)



Basic Information


Item Value
gene id AMCG00003407
gene name nmbr,LOC106607916,LOC106571412
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 1656385 ~ 1724582 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00003407
ATGAGGAGCGtgccaaatatatttatatcgaGTCTGGCTGCCGGAGATCTCCTGTTGTTAGTGACTTGTGTGCCTATAGATGCATTCAGATACTTCTTCGAGGAGTGGATTTTCGGCACCGTGGCATGCAAACTGATCCCAGTGATCCAGCTCACTTCGGTAGGGGTCTCCGTGTTCACCCTAACCGCTCTCAGCGCTGACAGgtACAAAGCCATCGTGAACCCCATGGATATCCAAACATCGAGTGCAGTGCTTTGGACCTGTTTAAAGGCTATCACCATATGGATAATCTCTGTGTTGCTGGCTATTCCAGAGGCCATCTTCTCCCAAATGGAGACAAGGAAACGTCTGGCCAAAATTGTCTTGGTGTTCGTGGGCCTCTTCGCCCTGTGTTGGTTCCCCAATCACATGCTCTACATGTACCGCTCCTTCAACTACAGAAAGATTGATTCAACATTGGCTCACATGATCATCACCCTGGCTGACAAGTAA

Function


symbol description
nmbr Predicted to enable G protein-coupled receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within signal transduction. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human NMBR (neuromedin B receptor).

NR:

description
PREDICTED: neuromedin-B receptor-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00003407 True 492 mRNA 0.49 4 1656385 1724582

Neighbor


gene id symbol gene type direction distance location
AMCG00003404 NA coding downstream 401404 1253869 ~ 1254981 (-)
AMCG00003403 NA coding downstream 410331 1244554 ~ 1246054 (-)
AMCG00003402 NA coding downstream 439618 1068039 ~ 1216767 (-)
AMCG00003401 NA coding downstream 725807 919312 ~ 930578 (-)
AMCG00003399 NA coding downstream 853672 671361 ~ 802713 (-)
AMCG00003416 NA coding upstream 346246 2070828 ~ 2088149 (-)
AMCG00003417 NA coding upstream 570868 2295450 ~ 2303413 (-)
AMCG00003418 NA coding upstream 606113 2330695 ~ 2337060 (-)
AMCG00003424 NA coding upstream 683472 2408054 ~ 2415951 (-)
AMCG00003426 NA coding upstream 782976 2507558 ~ 2523325 (-)
G257 NA non-coding downstream 68124 1587817 ~ 1588261 (-)
G212 NA non-coding downstream 497822 1142238 ~ 1158563 (-)
G188 NA non-coding downstream 620703 1033660 ~ 1035682 (-)
G122 NA non-coding downstream 886399 734766 ~ 769986 (-)
G112 NA non-coding downstream 1040065 614191 ~ 616320 (-)
G277 NA non-coding upstream 101915 1826497 ~ 1830075 (-)
G279 NA non-coding upstream 116216 1840798 ~ 1843781 (-)
G306 NA non-coding upstream 302339 2026921 ~ 2027350 (-)
G322 NA non-coding upstream 361876 2086458 ~ 2086758 (-)
G345 LOC107575789 non-coding upstream 622480 2347062 ~ 2347409 (-)
AMCG00003400 abracl,LOC107727609,LOC107558932,LOC107553474 other downstream 699189 945223 ~ 957196 (-)
AMCG00003423 NA other upstream 673060 2397642 ~ 2401895 (-)
AMCG00003422 NA other upstream 702815 2427397 ~ 2438821 (-)
G531 adck3,coq8a,LOC107602173,LOC107675039,LOC107727627 other upstream 1670075 3394657 ~ 3430272 (-)
AMCG00003444 NA other upstream 1811590 3536172 ~ 3538967 (-)
AMCG00003459 NA other upstream 2151650 3876232 ~ 3895524 (-)

Expression



Co-expression Network