AMCG00003416


Basic Information

Item Value
gene id AMCG00003416
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 2070828 ~ 2088149 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003416
ttgtcttgaaGGTACGATAAATATAAAGGTCCACAAAAACCCACTGAGAAAAGACGTCTTGCACTGGCTAAAAATAAATAGATGGACTCCTTGCAATTCTTCACTGGATAgtgtttttcatgtattcattgAGCAGTTGATGGAAAACCCACAAGATAAGGAATGCAATTGAGACTTGttatatacacaaaaaaataaatgactgaataaagtttacaaaaaacGCAAAAGAGTGGCTGTAAGAAGTCTGATGCCCAAAAAAGAAAGTTTTGGATATACTAAAGAAAAGGAACATCTCCGGGGCCAACCCAAGGGAAGCAAACAAAATGGGAAGATCAGGGATTTGAAGGCTAGAAGCGTGGGTGCGCATTTGACATGTCTGCAGACCTCAGAACAATCTAACAAATTTCAACTTAAATAAATCCtacaggagaaaagaaaaaaaatggagcCGGTTGAATCTGCTGCTGGACAAAAACCTATTAAGGAGTCTCGAGAAAAGAACCTACTACAAAGGAAATGGGTATCTGAGCCCACAGCTGGCACTAAAAGAAGCACTTTTGCTGATCTGGAGGGAAAGAGGCACTCGCAACGTGATGTGACGCAAAGTACCGGTGGCAGCGTCACAGGATGCACACAAAAGTACAGTTCTGGGAAATCGCAATTATTATCTGCTGTTGGCCAGCCCTCTCAAGATAGTCAGTACCCGCAACTTTTTCCTAGCACTTACTCTTACCCGCTTTCACATTCTTTTCCACAGCAATCTATACCAGAGAGATTTCTACAGAGTGCAAAGCCACAGGCCAGTCTAGAAGCCTGGCAATTTGCTAGCCAGTTACAGTCGGTCACCTCTGAGGACTTGTTTTCTGTGCACTCCCGCGTTCATGGAGGAGGCTTCCCACGAAGGAAGTCTCCCAGTTTACCTTCATCTTACAGCCAGTTCTCCCAGTCAGGAATGGAACAGCCAGAGGAAGTACATAAGAAGGAGCAGAAACCCAAGAAGCCAGGGAAGTATATTTGCCATTACTGTGGAAGGGCTTGTGCTAAACCCAGTGTGCTGAAGAAGCACATCAGGTCACACACTGGTGAGCGGCCATATCCTTGTGTTCCTTGtggattttcctttaaaaccAAGAGTAATTTATACAAGCATAGAAAATCTCATGCCCATGCCATTAAAGCAGGGCTAGTCCCCTTTTCAGAACTGGCAGCTTCGCGTACGGATATGGATCAGGCATCGTCAGTTGGAGAAACTGAGGTACATTCAGATGGGGAGCAAAGCACGGACACTGACGAAGAGACTGCTTTAAGTGCAGAAGGCTCCGGATATTTGGATAAAAGCAGCCCCATTCCCCAGATTTCTTTTGAAGCTGACAAAAGCACAATAGAGAAAGGTGGTGAATTTGGATATGTGGATTCAGCTGAGGAACTGGCTGTGGCTTCCATGAAAGTGCCTATTCTGATCATCCCTAAGCAAGGGATTCAGACAGCAGGGGAGTGTCCTCACTATACAGAGATAGATGCAGCTCCCATCAGTGTACACAGTGGCAGGGTGGATGAATCTCACACTATCAAACAGAGACTTGCACTGAGACTCACTGAGAAGAAAGGGCAGGATTCGGAGCAGTCCTTAAACCTTTTGAGCCCACACAGCAAAGGCAGTACAGACTCTGGCTACTTTTCCCGCTCAGAAAGTGCCGAACAGCAAATCAGTCCACCGAATACGAATGCAAAATCCTATGAGGAAATCATGTTTGGAAAGTATTATAGACCGAACCCCAGGACTTCTATGTCAGTGGGGATGGCCACAGTAGTGAGCCAAGACACTAATCTACTTGACTTAAAAGACAAGTCTTTGTCCATTGGTGCATCCAAATTTGGCATGGGCAAGATGATTGAAGATCAAATATCTAATCTTAtcacaaaaaatgaaaccctGATTGACCCAATTACTAAACTGAATGCCAAGGCATTTTCTAGAGGAGACCACTCAGAATCACAAATGGTAGCAAGTTCTGACCCTAAGCAATATCATGTAGACACTTGCCAAAGCAACACAAGTCTCTTAGAAGCTCCTTCTGATACAGGGACACTGATTAGGAGCAACTCAATGCCTACATCCTCGGCATCAAATCTAAATGTCCCACAGGGTCTACGAGGAAGCCATTCCTTTGATGAAAGAATGACTTCTGATGATGTGTTCTATCCTGGTTCTGCAGGGCTGCCTCATCGAAGCATGCTGAGGAGGCAAGCTGCTTTTGAACTCTCAGCACATGAAGGGCATCCAGAATCTGACATCTATGGAAATATCTCCAAGAATATTCTTAATTCTGGAACAGTAAAACTGGCTGAACGCAATCCTGCAATGTCAGAGTTGAAGGGTTCTGGAGGGGAAAGGAACCTGTTTGAATGTGAACTATGCAGCACTAGTTACAGAAGATGGGAAGAATATGAAACTCATAAAAAACGTTCTTGCCCAGAAACACGTGTAAAATACGGAACATATAGTACAAAGGTGGGAATGGAGGTTTACTCCGACTATTCAACTCAGTCCCAGTTAATGCAACACAGACAGGTCACAGAAACTGCAACAAGAAAACGTAGAAAGGAAAAGAGTGTTGGTGATGACGAAGACCTTCCTTCTCAGTATAGCAGTGATCTGGGTGGGTCTATTGAAATGCTGGTGTTGGCTGTAGACTATGattcaaataaagcaaatcaGGAAGCTACAAGATCTACGCCTACTGGCAAAGCTCATAATTACAGTGTGCATAGCCAATCTGACAGTTATGAATCTGGTGGTATTCTTTCCACTTCTGCTAGCCTGTCAGCGGAGGATGTGGTGCTTGTTCCAGACTCTGACAAGACGACTGACACCAGTAACAGAAAAGCTGTTGGAAATGTCATTTCTGTCATCCAGCACACTAACTCATTAAGTAGGCCCAGCTCTTTTGAAAAGTCTGAATCATTTGAACATCCATCTTACCAGCAGGAGAAACCTGCCGGCCAGCATTCGGAACAGTCCGACTCAGAAAACATTGAAGAAGTGCAGAGCACAGACCCTGCTCTGCAAGCTGAAAGCATGGAACAGCAACAGAGTGATGTAGAGCCAGCAAACCTGCCTCCAAGCCACCAGCAATATCACATACCACCTAGGCTGGTCCGTCAACCCAACATCCAAGTGCCTGAAATCCGAGTGACTGAGGAGCCCGATAAGCCAGAGAAAGAGCCTGAAGTCCAGCCTAAGGAACCAGAGAAACATGTAGAGGAGTTCCAGTGGCCGCAGAGAAGTGAAACACTTTCTCAGCTACCAGCAGAGAAACTGCCTCCGAAAAAGAAACGCCTGCGTCTGGCTGAAATGGAGCATTCCTCTGGAGAATCCAGCTTTGAGTCAACCTGTACCAGCCTTTCCCGGAGCCCAAGCCAAGAGAGTAATCTGTCCCATAGCTCAAGCTTCTCAATGTCGTTTGACAGGGAAGAAAGCATTAAGTCGGTTTCCCCGACCAAGCAGGATGACTTTAGCAAGCAGTCTGAATTTTTAACTGTGCCAGGCAGTGGACATACGCTTTCTATTCCTAGTCAACACCAACAAAGGGAGATGCGTCGCTCTTCTTCAGAGCAAGCACCCTGTGCATTGCCCACAGAAGTCCCTGAGATTCGGAGCAAGTCTTTTGACTATGGGAGCCTATCATCTGCATccccacagagagagacttATGCGAGCGCTTCAGCAATGAAGGAGCGGAGACGAGGTTATCTGGTTCGCCAGGCATCTTTAAGTGTCTACCCTGAAACTATGGTGCAAGACCAAGGCACAGATCAAAATGTTAAGCAAGAGCATTCAGAGCATTTGTCAAGCAGTCATCATACATCACATTCTGGTTGGCAAGGCTCTGCTTCATCTTTACTTCATGGAGTACCAGCAAGTGATGTAGCAAGATCCAAGAGAGGTATGCAGCCAGTCCTTGGTTCGCATCATCATCCCTTACAGCTAAGTATTAGTGAGGACAGTCCACCAGATGGTTATGCACTCATCAAAAAGACATCTTACTTGCCAGGCCAACACCCTACAGAAAGTGAGAGGCAAATACATGACCTTCCAAATCGGGAAATAATGCAGTACTCCTCACTTCACAGCAGCCTGGCCCAGACTCCCTTCCTGCCATTTCAGCAGGGCATGTTCTGGCACCCAGAATCAACACAAAGGCAAAAACATCACCTTGCTTTCCAGCCGCACCAATTACAGAAGCTGCATATCAGGTCACCTAATGTGCCACCTATTCACCCTAAATCACATGCTTCTCTTCAGCTCCAGCAGATTCAAGAGCAAGGCGACGCAAAGACGGTTGACAGTGTCAGCAATCAGAACTACCAGTATCTTTCAAGAACTTCCCCACAACATCCTGGCCATCTCTCAGCAAAGACGTACTCCACAAGTACTATGCTTTTACAGCAAGTTCAGCCAATCTTTGCCACCCAAAATGCTGGTCCTCAGCCATCGCTCCCAGGTATGTTAGTTCCGGTAAGAATACAGACCCATGTGCCATCTTACGGTAGTGTTATGTACACTAGTGTTTCACAGATTCTGGTAAGCCATGCCCAGAGCACTAGTTCTACTATGGTCATATGCAAAGTCACAGACAATACTTCCCAGGGCTCTTTTACAAATACAGGTGCAAAGCATGGAATAGGATTCAATTTATCTCACATACTAGGCCATCCTAGTGGACTTCTGAGATATCCACTCTGGAAAGTACCACAACAACTGCCAGGAAGATTGGATACAGGGATTCCCTTGTGCTTGACCTCTGGAAGCATCTCCACTACAGATGCTTCCTCGAATATTGGAGGGAGCAAAAGGATGCTGTCACCAGCCAGCAGTCTCGAGCTCTTCATGGAGACAAAGCAGCAGAAACGGGTCAAGGAAGAAAAGATGTATGGTCAGATTGTGGAAGAACTCAGTGCAGTGGAACTCAGCAATTCTAGTGTGACGAAAGATCATGCCAAGTCACAAAAACCAGACCATCAAAGGCATGACAACACAGTAGAATTCACAGAAGGAATGTCATCACCACCCCTGTTGGATTATCCTGCTTCCAAAGCCCCTTTGCTTATGTCTGCTGACTCAAAAGAGGGTTCATCAAGTGACAGTTTCACTCCACCACGACAGATAGTGACCAACACCTCTGATGGCAGAGAATCACCAGAGGAACTGTATGTAGATGAAACTGTACCCGAGGTCAACTCAAGCCCACAATCAATGATTTCCACAAGTGATATTCAAGATGAAAACAAGCTGACACTGAGCAGTAAGATTCCAGTAAATATGCTGGTACAGCTGGCTGCCAATCAGGGTGGGACTGTTGTTGGGAGTACAATTCTGCTTACTGATGTTGCCGATGTCCAACAATTCTTTCAGTTCCCCAGTCTTCGCACAACCACAAGTGTCAGCTGGTGCTTCCTGAATTACACCAAGCCAAACCATGCGCAGACGACTCCTCTATCCTCGGTTTATGCTTCTTGGTGCGTCAGCTCCTACAATCCGAATCCGCCCAGCCTGAACACCAAAACTACCCTTGCACTTCTTCGGTCGAAGCAGAGGAACAATACCGAAACCTACACGATGGCTGCCATGTATCGTCCTGGGACTGGCAAACTTGTGTCCTCAGTCTCCTGGAAGCAGAAGTTTGATCAgGTGAAACCAGAGCTCATGCAACTGGAAGTGAACaagtttgaaaagaaaatgaaggcaAGCAGCACaagggaaagagaaaaggaagaTCACCATGGAGAGAAAGATGTGTCCACAAAGCAAGCTGAACCGACCCGCATTAAAATCTTTGAAGGAGGATACAAATCCAATGAAGACTATGTTTACGTGAGGGGCAGAGGCAGAGGGAAATATATCTGTGAGGAATGTGGAATCCGCTGCAAGAAGCCAAGCATGCTGAAGAAACACATCCGCACGCACACTGATGTGCGCCCATATGTCTGCAAGTTCTGCAattttgctttcaaaactaAAGGAAACCTGACAAAACACATGAAGTCTAAAGCCCACATGAAGAAATGTTTGGAGCTTGGGGTGTCAGTGACATCTGTGGATGATGTAGAGGCAGAGGAAGCTGATAATGCTGACGATGTCCAGAGAGAGTCTGGGAAGATGGGTGTGTCAGATGTCCCTACAGAGCACCAGTTCTCGGATGTGGATGACTCTGAAGGGGGCGAGGAAGAGGGTGATGAAATTGATGACGATGATGACGAAGACGACGAATATGAGGGTGACTCCACTCCAAAGACCCGGTCCCGAAGCACAAGCCCCCAGCCCTGCGGGATCTCCTCCCTGTCTGTCACGGCTGCCGCTGCCTCCCACGGAACCCACAGCTCTGACTTCCTGAGCTCAGCAAGCAAGCCCCCGTTGATCAGCTACTTTGTCACCTTGCCCAGCATCCAGATCACTCAGCTGATGGTGCCCAGCGAGAAGGCTGGCGACCCCCAGATGGCGGAGTACCAGAGACTCTTGCAAGGTGCTCTGGGTGAAGACTTCAAGAGCCAACTGGATGTGCCCAGCTCCATGGATGAAGATTATGCACTGTCTCCAGAATATAGCTCCTCTTCCACTGATCTCTCTCCATCCCGACTGTCCTCTCCAGGCTGTGAGTCCTCACCTCGCAGAGAGCTATCGCCAACATCCAGGAGGTATCTTTCTCCCAGGAGAGATCTCTCACCGCATGGCCGACTATCACCTAGACGAGATGCTTCACCCTTGAGGCACCTTTCTCCAAAGAGGGATGTGACATTCAAGAGGGACCTGTCACCCAGAAGGGATCTTTCTCCCAGAAGACATCTCTCACCCATTTCTCTTGGAAGACCTATGTCCCCTGGGAAGGACATGTCCAGCAGACGAGAGGTGTCTCCCAGGAGTCGTCAGAGGGGCTTGATCAGAGCTCCGTCACCGAGGAGGGGCTCTCACCACCACAACGCTCCCTGGGCACTTGGACAATACCTGCAGTCTGAAATGATTCCACTTGGGCAACGGAACCGGAGCCACTCGGACATAGAGacgGATCCAAGGAAGAACTTGCTTCACCCCTCGCACCTCTCAGCAGACCAGCTAAGCGGCCATGAACCTACAAATACTTCTGTGTTCCCCAATGGCCATCAAGGTTATGTCTTCTCCCACCTCCCACTGCACTCCCAGCAGCAAGTCAGGACTCCCTTCCCCATGATTCCCATTGGAGGAATCCAGATGGTGCATTCAATACCGGCCTCTGTCACAGGCTTGGTCCATTCGACAAGGCTGTCCCTACAGAAGAGCACTTCAGAGGAGTCAAGCACCAGTGAGGTGTCCTTCCCTCTCATAGACAGCagcaggggagggggagaggacTCCCCCAAGCAGCCAGAGAAGCTGGTCTCCTCTCAGGTGCTGATGTCATCGCACATGCCCACCACCTTGCCCAACTCTGGCGCTGAAAAGGACAACCTCAGTACATCAAAGACTACATCAGTCCATTCCACTTTCTTCAGCAAAAGTGCAGACGAGAGACTGTTAGGCCAGCAGAGTCTGAGGGAATTGCCAACAAGCACAAAGACGGGTAAAGATTCATCGAGAGAAGCCATTGACAATAGGTAA

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG:

id description
K09239 HIVEP; human immunodeficiency virus type I enhancer-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003416 True 7636 mRNA 0.47 8 2070828 2088149

Neighbor

gene id symbol gene type direction distance location
AMCG00003407 nmbr,LOC106607916,LOC106571412 coding downstream 346246 1656385 ~ 1724582 (-)
AMCG00003404 NA coding downstream 815847 1253869 ~ 1254981 (-)
AMCG00003403 NA coding downstream 824774 1244554 ~ 1246054 (-)
AMCG00003402 NA coding downstream 854061 1068039 ~ 1216767 (-)
AMCG00003401 NA coding downstream 1140250 919312 ~ 930578 (-)
AMCG00003417 NA coding upstream 207301 2295450 ~ 2303413 (-)
AMCG00003418 NA coding upstream 242546 2330695 ~ 2337060 (-)
AMCG00003424 NA coding upstream 319905 2408054 ~ 2415951 (-)
AMCG00003426 NA coding upstream 419409 2507558 ~ 2523325 (-)
AMCG00003431 galnt14,LOC106607829,LOC106571428,LOC108429358,LOC107676246 coding upstream 586009 2674158 ~ 2725919 (-)
G306 NA non-coding downstream 43478 2026921 ~ 2027350 (-)
G279 NA non-coding downstream 227047 1840798 ~ 1843781 (-)
G277 NA non-coding downstream 240753 1826497 ~ 1830075 (-)
G263 NA non-coding downstream 355972 1714577 ~ 1714856 (-)
G257 NA non-coding downstream 482567 1587817 ~ 1588261 (-)
G345 LOC107575789 non-coding upstream 258913 2347062 ~ 2347409 (-)
G372 NA non-coding upstream 317494 2405643 ~ 2406084 (-)
G453 NA non-coding upstream 917223 3005372 ~ 3005681 (-)
G458 NA non-coding upstream 918819 3006968 ~ 3058204 (-)
G464 NA non-coding upstream 998316 3086465 ~ 3111051 (-)
AMCG00003400 abracl,LOC107727609,LOC107558932,LOC107553474 other downstream 1113632 945223 ~ 957196 (-)
AMCG00003423 NA other upstream 309493 2397642 ~ 2401895 (-)
AMCG00003422 NA other upstream 339248 2427397 ~ 2438821 (-)
G531 adck3,coq8a,LOC107602173,LOC107675039,LOC107727627 other upstream 1306508 3394657 ~ 3430272 (-)
AMCG00003444 NA other upstream 1448023 3536172 ~ 3538967 (-)
AMCG00003459 NA other upstream 1788083 3876232 ~ 3895524 (-)

Expression


Co-expression Network