AMCG00003423


Basic Information

Item Value
gene id AMCG00003423
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 2397642 ~ 2401895 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003423
ATGTCTGACGGGCGACTTGCAAGCGATGTTTTGCATATAAATGCCGACAATCTGCAACTACTTCGCAGGTGCGAGAGCTCTGAGGACGATGACAAAAAATTaaagaggagggaaaaaaacagagtTGCTGCCCAAAGAAGTCGCAAGAAGCAGACCCAAAAAGCAGACAAACTGCATGAGGAATATGAGACCCTTGAACAAGAGTACAGCTCCCTGAAGAAGGAAGTCCAGAAACTCACTGAGGAGAGGAAGCGTCTGACAGAAGCTTTGAAGGCCCACGAGCCCCTTTGTCCCCTGGTGCACTGTGCCATGAACCTGATGCCTGTTCCCAGGCCTGACGTCATCACCAGCTGCCTGCCCAGATAGAGACTGAGGTGATATTTGTTGGTGGCTTTTGTATCCATGGGTGACTGGTTCACACACAGGGAGGTTGCAATCCTCAGAAGATTCCAGATtattaatttgaagaaaaactgaaatgtatcaTGTTTCTCACAAAAATAATCATTCTTGACAGTAGGCAGGAAGGGTATTTCTAATCCTGCTTCAATAGAACTGGCTGTTTGTCAGTCAGTTGGAGATGCAGTTTTCAGTTTTGCTAGTACTCATTTTAGAAGTGGTATTATCTTTTAAATCTGTCTGAATCCTCCATAGTTGTGAAAAGCAGCCACCAGTAATGGGTTAAAGAAGTTAGTTCAAAGAACTTCATGGAAACAgtaagtcaaataaaaatacccAATACTTTACAGACTTGGTTCATGTTACATCTGAAAGATATTCATGCAAACGCTGGACTTGTGGGAATGCTCAGGGATATGTATGCCTTCAAAGTAaaatttttctttgtttttaataagtaaaacataaatatttccaTCCCTTTCTGTGATTGGTCTAGCTTCAACACTTAATGTACATACcttttattgaaacatttttttgttgatgtCCTGTTTTGAATGTTgagttgtatttaatatttataagaCAGTGTTTTTATATTGGTCTTTATGTGTGTGAATGGTTCTTACTTCTGCTGTAATACTTCCAGATAAATGAAATGCCTTTGATACAGACTCATATGCTATGATcgaacaaaataaattaattgaatgtacAGTTTGTACA
>TU425
GCGATACTTGTCCTGTCACCACTGAGAACTACAAGTCGGGAGAGCATGTGACTTAAAAGAAATTTCAAGGCCAGTTTCAAGAAAGAGGTaacttgctttaaaaaaagcGAAACTGACGGGTAAGATGTGTATTGCATCACTGACTAATACACGCTTCGAGACGGAGCAGGAAAGAGATGTCACCTATTCCCGGTCATAGCAAAGGCGTTCTCGGCGAAGCTGGGTTATTGTTAGCAGTGGgctgaaaacacacagagctCCCACCCCGAGGTTGCATGCGAGCAGCTCTTCATTTCCGACTCATGCGTCCTCCTCTGCGCTGGGCGACACGGCTGCGATGTCTGACGGGCGACTTGCAAGCGATGTTTTGCATATAAATGCCGACAATCTGCAACTACTTCGCAGGTGCGAGAGCTCTGAGGACGATGACAAAAAATTaaagaggagggaaaaaaacagagtTGCTGCCCAAAGAAGTCGCAAGAAGCAGACCCAAAAAGCAGACAAACTGCATGAGGAATATGAGACCCTTGAACAAGAGTACAGCTCCCTGAAGAAGGAAGTCCAGAAACTCACTGAGGAGAGGAAGCGTCTGACAGAAGCTTTGAAGGCCCACGAGCCCCTTTGTCCCCTGGTGCACTGTGCCATGAACCTGATGCCTGTTCCCAGGCCTGACGTCATCACCAGCTGCCTGCCCAGATAGAGACTGAGGTGATATTTGTTGGTGGCTTTTGTATCCATGGGTGACTGGTTCACACACAGGGAGGTTGCAATCCTCAGAAGATTCCAGATtattaatttgaagaaaaactgaaatgtatcaTGTTTCTCACAAAAATAATCATTCTTGACAGTAGGCAGGAAGGGTATTTCTAATCCTGCTTCAATAGAACTGGCTGTTTGTCAGTCAGTTGGAGATGCAGTTTTCAGTTTTGCTAGTACTCATTTTAGAAGTGGTATTATCTTTTAAATCTGTCTGAATCCTCCATAGTTGTGAAAAGCAGCCACCAGTAATGGGTTAAAGAAGTTAGTTCAAAGAACTTCATGGAAACAgtaagtcaaataaaaatacccAATACTTTACAGACTTGGTTCATGTTACATCTGAAAGATATTCATGCAAACGCTGGACTTGTGGGAATGCTCAGGGATATGTATGCCTTCAAAGTAaaatttttctttgtttttaataagtaaaacataaatatttccaTCCCTTTCTGTGATTGGTCTAGCTTCAACACTTAATGTACATACcttttattgaaacatttttttgttgatgtCCTGTTTTGAATGTTgagttgtatttaatatttataagaCAGTGTTTTTATATTGGTCTTTATGTGTGTGAATGGTTCTTACTTCTGCTGTAATACTTCCAGATAAATGAAATGCCTTTGATACAGACTCATATGCTATGATcgaacaaaataaattaattgaatgtacAGTTTGTACATCAGTGTGGTAGTAAACTATATGATGTATAGTTCTGTATGATCTAGGGTTAACATACATCCCAGTTTGACTGGGGTCATTCCAGTTTTACACTTGGTTTTTGTTACTTTCAGAAAAGgtacatttcttaaattg
>TU426
GCGATACTTGTCCTGTCACCACTGAGAACTACAAGTCGGGAGAGCATGTGACTTAAAAGAAATTTCAAGGCCAGTTTCAAGAAAGAGGTaacttgctttaaaaaaagcGAAACTGACGGGTAAGATGTGTATTGCATCACTGACTAATACACGCTTCGAGACGGAGCAGGAAAGAGATGTCACCTATTCCCGGTCATAGCAAAGGCGTTCTCGGCGAAGCTGGGTTATTGTTAGCAGTGGgctgaaaacacacagagctCCCACCCCGAGGTTGCATGCGAGCAGCTCTTCATTTCCGACTCATGCGTCCTCCTCTGCGCTGGGCGACACGGCTGCGATGTCTGACGGGCGACTTGCAAGCGATGTTTTGCATATAAATGCCGACAATCTGCAACTACTTCGCAGGTGCGAGGTAAGTGAGAGCTCTGAGGACGATGACAAAAAATTaaagaggagggaaaaaaacagagtTGCTGCCCAAAGAAGTCGCAAGAAGCAGACCCAAAAAGCAGACAAACTGCATGAGGAATATGAGACCCTTGAACAAGAGTACAGCTCCCTGAAGAAGGAAGTCCAGAAACTCACTGAGGAGAGGAAGCGTCTGACAGAAGCTTTGAAGGCCCACGAGCCCCTTTGTCCCCTGGTGCACTGTGCCATGAACCTGATGCCTGTTCCCAGGCCTGACGTCATCACCAGCTGCCTGCCCAGATAGAGACTGAGGTGATATTTGTTGGTGGCTTTTGTATCCATGGGTGACTGGTTCACACACAGGGAGGTTGCAATCCTCAGAAGATTCCAGATtattaatttgaagaaaaactgaaatgtatcaTGTTTCTCACAAAAATAATCATTCTTGACAGTAGGCAGGAAGGGTATTTCTAATCCTGCTTCAATAGAACTGGCTGTTTGTCAGTCAGTTGGAGATGCAGTTTTCAGTTTTGCTAGTACTCATTTTAGAAGTGGTATTATCTTTTAAATCTGTCTGAATCCTCCATAGTTGTGAAAAGCAGCCACCAGTAATGGGTTAAAGAAGTTAGTTCAAAGAACTTCATGGAAACAgtaagtcaaataaaaatacccAATACTTTACAGACTTGGTTCATGTTACATCTGAAAGATATTCATGCAAACGCTGGACTTGTGGGAATGCTCAGGGATATGTATGCCTTCAAAGTAaaatttttctttgtttttaataagtaaaacataaatatttccaTCCCTTTCTGTGATTGGTCTAGCTTCAACACTTAATGTACATACcttttattgaaacatttttttgttgatgtCCTGTTTTGAATGTTgagttgtatttaatatttataagaCAGTGTTTTTATATTGGTCTTTATGTGTGTGAATGGTTCTTACTTCTGCTGTAATACTTCCAGATAAATGAAATGCCTTTGATACAGACTCATATGCTATGATcgaacaaaataaattaattgaatgtacAGTTTGTACATCAGTGTGGTAGTAAACTATATGATGTATAGTTCTGTATGATCTAGGGTTAACATACATCCCAGTTTGACTGGGGTCATTCCAGTTTTACACTTGGTTTTTGTTACTTTCAGAAAAGgtacatttcttaaattg

Function

GO:

id name namespace
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003423 False 1128 mRNA 0.39 3 2397776 2401558
TU425 False 1599 TUCP 0.54 3 2397642 2401895
TU426 True 1608 TUCP 0.50 3 2397642 2401895

Neighbor

gene id symbol gene type direction distance location
AMCG00003418 NA coding downstream 60582 2330695 ~ 2337060 (-)
AMCG00003417 NA coding downstream 94229 2295450 ~ 2303413 (-)
AMCG00003416 NA coding downstream 309493 2070828 ~ 2088149 (-)
AMCG00003407 nmbr,LOC106607916,LOC106571412 coding downstream 673060 1656385 ~ 1724582 (-)
AMCG00003404 NA coding downstream 1142661 1253869 ~ 1254981 (-)
AMCG00003424 NA coding upstream 6159 2408054 ~ 2415951 (-)
AMCG00003426 NA coding upstream 105663 2507558 ~ 2523325 (-)
AMCG00003431 galnt14,LOC106607829,LOC106571428,LOC108429358,LOC107676246 coding upstream 272263 2674158 ~ 2725919 (-)
AMCG00003435 NA coding upstream 811916 3213811 ~ 3217086 (-)
AMCG00003437 NA coding upstream 837989 3239884 ~ 3250722 (-)
G345 LOC107575789 non-coding downstream 50233 2347062 ~ 2347409 (-)
G322 NA non-coding downstream 310884 2086458 ~ 2086758 (-)
G306 NA non-coding downstream 370292 2026921 ~ 2027350 (-)
G279 NA non-coding downstream 553861 1840798 ~ 1843781 (-)
G277 NA non-coding downstream 567567 1826497 ~ 1830075 (-)
G372 NA non-coding upstream 3748 2405643 ~ 2406084 (-)
G453 NA non-coding upstream 603477 3005372 ~ 3005681 (-)
G458 NA non-coding upstream 605073 3006968 ~ 3058204 (-)
G464 NA non-coding upstream 684570 3086465 ~ 3111051 (-)
G500 NA non-coding upstream 794010 3195905 ~ 3211877 (-)
AMCG00003400 abracl,LOC107727609,LOC107558932,LOC107553474 other downstream 1440446 945223 ~ 957196 (-)
AMCG00003422 NA other upstream 25502 2427397 ~ 2438821 (-)
G531 adck3,coq8a,LOC107602173,LOC107675039,LOC107727627 other upstream 992762 3394657 ~ 3430272 (-)
AMCG00003444 NA other upstream 1134277 3536172 ~ 3538967 (-)
AMCG00003459 NA other upstream 1474337 3876232 ~ 3895524 (-)
AMCG00003476 NA other upstream 2181247 4583142 ~ 4808989 (-)

Expression


Co-expression Network