AMCG00003431 (galnt14,LOC106607829,LOC106571428,LOC108429358,LOC107676246)


Basic Information

Item Value
gene id AMCG00003431
gene name galnt14,LOC106607829,LOC106571428,LOC108429358,LOC107676246
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 2674158 ~ 2725919 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003431
ATGTCAAGGAACCCATTTTTGGTTCTAAATGTACTCAACCGAACCCCCGTTCACCTGATTCATGAAATTATATTAGTGGATGACTTCAGTGATGACTCTAATGACTGCCTCCTGCTAGCCAAGTTACCCAAAGTGAAGTGTTTGCGTAATGACCAGCGAGAAGGCCTAATCCGCTCCAGGGTACGAGGGGCAGATGCTGCCCGAGCCGGGGTACTGACATTTCTGGACAGTCATTGTGAGGTGAACAAAGATTggctccctcccctcctccagaGGATAAAGGAGGACCCAACTTGTGTAGTGAGTCCTGTCATTGACATCATCAATATGGATAGCTTTGCATATGTGGCAGCTTCCTCTGACCTCCGAGGAGGTAAGACTCCAATTATTGCTGGAGGGCTGTTTGTGATTGACAAGTCCTGGTTTAATCACCTGGGGAAATATGATACAGCCATGGACATCTGGGGTGGGGAAAACTTTGAGATTTCTTTCCGTGTTTGGATGTGTGGCGGCAGTCTGGAAATCATACCCTGCAGCCGTGTTGGCCATGTCTTCCGTAAGAAACACCCCTACATCTTCCCTGAAGGCAATGCAAACACCTATATAAAGAACACAAGGCGGACAGCTGAAGTGTGGATGGACAAATTCAAACTTTTCTACTATTCAGCACGACCAGCTGCCCGAGGAAAACCCTATGGCGACATTCAGAACCGATTGGAACTCCGCAAAAGTCTTAAATGCAAATCTTTTCAGTGGTACCTGGACAATGTTTATCCAGAGCTGAAAATCCCAGATGAATCAGATTCCAAGTCTGGGGTGATCAAGCAGAGGCAGAACTGCCTTGGGTCTCGCAAGGAAGAAGGGCAGGATATGCCGATACTCACACTAGGACCCTGCATCGGCAGTAAAGGAGTGCTGGCTCTGAATCAGGAATGGAcgtacacacacagccagcagaTCCGCCAGCTGCAGCACTGCCTCTCGCTCTCCACCACCTACCCGGCCTCACAGATCCTGCTCATGCCTTGCAACGAAGGAGATGGGAAACAGAGATGGCAGAAATCTGGTACCCACATTGAGCACTTAGCCTCTCACTTCTGCCTTGACAGTGAAATGGCTCTGGATGAAATAGAGAGTAGCAAAATGCTTGTGATAAACCCATGTGAGCTCACCGCTTTCACCCAGAGATGGCAAGTGTCATTTTCATGATTTCCGGGAGAATGGAAATTCATGTGTGATGTGTGACTGACAGTGCTCTCTCAGGTTTGGGACATTGTCATCAGAAGCTTTGAGAACACAAGAATGGGAGATGGACACCAAAGATGACCAATACAAGGAGTTGAATCCTTCCTGGTTGTATCCCAGGTGAAACTGGAATAAATGGGAAATTCATGTTTACATCCTGTGATTATTGCTGACCAGTCTACACAGCACAGGTCGGTAGGATGGAGTTTGGAAGTCGTGTCACTGGATGGAACGACATGTTGAAAACTGACAGAAAAAGAATGCTGTTTTTTCAGTGGTTactgaagtgtttttgtttgtttgcttttggttGGATGATTAGCTTCCACTCGCTGCTGTGACCCGAAGACTCAAGAAAGGTGGTTTCTAAGGAATGGAAGAGAAGCAATCAGGAAAACATCGTCTGCCTCCCAATTCCAATCCTTCCAATTACAAGGGGTCAAAGTCCAGTTGATTTTGTCAGAAAAGACAAGCAGTTGGACCCAACCACAATTAAGTTAAGTGAGATGTTAGAATGTTAAAAAGAAGTCTAggcaatatttaattttactagCCTGTGACTTAAAGGGCCTTgataaagcaaaaaataatgATGCCCTGGCAGCTGATACCATCATATCCAACAAGTTTGGtcttcaaatgaaatgcatttatgttACAATCACCAACACCGCCTTGCATggcatctgaaaaataaaatgaaagaaacagatataaatactgaaaatgtttttttttttaaatggaaacacaGTACTATTGTGTTCTGATGATGCTGCAAATCTTGGTACCAaagataaaaagtaaaatgatggGGAAAAATTCAGTAAAATCCATTTCAATCAATAACTCGCATTTATAAACAAGTATTTATAGATTCACTAGTACACAGGATGGTTCTACAGTGAAACTTTAttaatgcataaaaacaaaactatcttAATAATCCCtgtcaataatacatttttaaaatcatatcaaGAAATTGTTATTTTGCCATATATTTCTCACTGCTTTACAGAAATTCAACATTACCTCAATGCTTCTTTTAGAACtcttatttaaagtattttaatacatgtaatggatttgattttgatttatatcCAGGCATCACTAGGATCATAGTGGTGAATTGTGATGTTTTAAACATCTTTGTAACAGCAtttattatgtgtgtgtctatttttaGTATTCAGGTCATTCCATTTGAactccattaaaaaaagcattttttgtattttaaatgatttaatattgATGCAACCCAATTGATGGGTTAGATGGGTTAATGAGAGGACTTGAAACCAAAAGTGAGTCACAAAATTAAGAAGACTGGCCCCTAAGGTTCTTGCTTGTTTAAGGTCACTCTCTCACTTCAggtcaatgaaaatatttagaaaatgtagaTGGTTGTGCAGTGGTCCTCACTGAGCTGTCATTAAATGTCCAATTTGCAAACCTATAAAATTGTTCTGgtcatttaagtaatttgttcaattaaggaaaCTGGTTGTTGAGGACTGATGGATATTCAAGTGTTT

Function

symbol description
galnt14 Predicted to enable carbohydrate binding activity and hexosyltransferase activity. Predicted to be involved in protein glycosylation. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human GALNT14 (polypeptide N-acetylgalactosaminyltransferase 14).

NR:

description
PREDICTED: polypeptide N-acetylgalactosaminyltransferase 14-like isoform X1

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K00710 GALNT; polypeptide N-acetylgalactosaminyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003431 True 2789 mRNA 0.41 12 2674158 2725919

Neighbor

gene id symbol gene type direction distance location
AMCG00003426 NA coding downstream 150833 2507558 ~ 2523325 (-)
AMCG00003424 NA coding downstream 258207 2408054 ~ 2415951 (-)
AMCG00003418 NA coding downstream 337098 2330695 ~ 2337060 (-)
AMCG00003417 NA coding downstream 370745 2295450 ~ 2303413 (-)
AMCG00003416 NA coding downstream 586009 2070828 ~ 2088149 (-)
AMCG00003435 NA coding upstream 487892 3213811 ~ 3217086 (-)
AMCG00003437 NA coding upstream 513965 3239884 ~ 3250722 (-)
AMCG00003436 NA coding upstream 564118 3290037 ~ 3291227 (-)
AMCG00003440 NA coding upstream 672807 3398726 ~ 3400684 (-)
AMCG00003439 NA coding upstream 679051 3404970 ~ 3415285 (-)
G372 NA non-coding downstream 268074 2405643 ~ 2406084 (-)
G345 LOC107575789 non-coding downstream 326749 2347062 ~ 2347409 (-)
G322 NA non-coding downstream 587400 2086458 ~ 2086758 (-)
G306 NA non-coding downstream 646808 2026921 ~ 2027350 (-)
G279 NA non-coding downstream 830377 1840798 ~ 1843781 (-)
G453 NA non-coding upstream 279453 3005372 ~ 3005681 (-)
G458 NA non-coding upstream 281049 3006968 ~ 3058204 (-)
G464 NA non-coding upstream 360546 3086465 ~ 3111051 (-)
G500 NA non-coding upstream 469986 3195905 ~ 3211877 (-)
G541 ccdc25 non-coding upstream 698169 3424088 ~ 3428291 (-)
AMCG00003422 NA other downstream 235337 2427397 ~ 2438821 (-)
AMCG00003423 NA other downstream 272263 2397642 ~ 2401895 (-)
AMCG00003400 abracl,LOC107727609,LOC107558932,LOC107553474 other downstream 1716962 945223 ~ 957196 (-)
G531 adck3,coq8a,LOC107602173,LOC107675039,LOC107727627 other upstream 668738 3394657 ~ 3430272 (-)
AMCG00003444 NA other upstream 810253 3536172 ~ 3538967 (-)
AMCG00003459 NA other upstream 1150313 3876232 ~ 3895524 (-)
AMCG00003476 NA other upstream 1857223 4583142 ~ 4808989 (-)
AMCG00003484 NA other upstream 2618151 5344070 ~ 5356468 (-)

Expression


Co-expression Network